Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ldrD-rdlD/Ldr(toxin)
Location 2093520..2093741 Replicon chromosome
Accession NZ_CP045206
Organism Escherichia coli strain DE17

Toxin (Protein)


Gene name ldrD Uniprot ID S1PGT3
Locus tag GBG22_RS10150 Protein ID WP_000170954.1
Coordinates 2093520..2093627 (-) Length 36 a.a.

Antitoxin (RNA)


Gene name rdlD
Locus tag -
Coordinates 2093680..2093741 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GBG22_RS10125 2089365..2090447 + 1083 WP_000804726.1 peptide chain release factor 1 -
GBG22_RS10130 2090447..2091280 + 834 WP_000456474.1 peptide chain release factor N(5)-glutamine methyltransferase -
GBG22_RS10135 2091277..2091669 + 393 WP_000200375.1 invasion regulator SirB2 -
GBG22_RS10140 2091673..2092482 + 810 WP_001257054.1 invasion regulator SirB1 -
GBG22_RS10145 2092518..2093372 + 855 WP_000811065.1 3-deoxy-8-phosphooctulonate synthase -
GBG22_RS10150 2093520..2093627 - 108 WP_000170954.1 type I toxin-antitoxin system toxin Ldr family protein Toxin
- 2093680..2093741 + 62 NuclAT_13 - Antitoxin
- 2093680..2093741 + 62 NuclAT_13 - Antitoxin
- 2093680..2093741 + 62 NuclAT_13 - Antitoxin
- 2093680..2093741 + 62 NuclAT_13 - Antitoxin
- 2093680..2093741 + 62 NuclAT_14 - Antitoxin
- 2093680..2093741 + 62 NuclAT_14 - Antitoxin
- 2093680..2093741 + 62 NuclAT_14 - Antitoxin
- 2093680..2093741 + 62 NuclAT_14 - Antitoxin
- 2093680..2093741 + 62 NuclAT_15 - Antitoxin
- 2093680..2093741 + 62 NuclAT_15 - Antitoxin
- 2093680..2093741 + 62 NuclAT_15 - Antitoxin
- 2093680..2093741 + 62 NuclAT_15 - Antitoxin
- 2093680..2093741 + 62 NuclAT_16 - Antitoxin
- 2093680..2093741 + 62 NuclAT_16 - Antitoxin
- 2093680..2093741 + 62 NuclAT_16 - Antitoxin
- 2093680..2093741 + 62 NuclAT_16 - Antitoxin
- 2093680..2093741 + 62 NuclAT_17 - Antitoxin
- 2093680..2093741 + 62 NuclAT_17 - Antitoxin
- 2093680..2093741 + 62 NuclAT_17 - Antitoxin
- 2093680..2093741 + 62 NuclAT_17 - Antitoxin
- 2093680..2093741 + 62 NuclAT_18 - Antitoxin
- 2093680..2093741 + 62 NuclAT_18 - Antitoxin
- 2093680..2093741 + 62 NuclAT_18 - Antitoxin
- 2093680..2093741 + 62 NuclAT_18 - Antitoxin
- 2093680..2093742 + 63 NuclAT_10 - -
- 2093680..2093742 + 63 NuclAT_10 - -
- 2093680..2093742 + 63 NuclAT_10 - -
- 2093680..2093742 + 63 NuclAT_10 - -
- 2093680..2093742 + 63 NuclAT_11 - -
- 2093680..2093742 + 63 NuclAT_11 - -
- 2093680..2093742 + 63 NuclAT_11 - -
- 2093680..2093742 + 63 NuclAT_11 - -
- 2093680..2093742 + 63 NuclAT_12 - -
- 2093680..2093742 + 63 NuclAT_12 - -
- 2093680..2093742 + 63 NuclAT_12 - -
- 2093680..2093742 + 63 NuclAT_12 - -
- 2093680..2093742 + 63 NuclAT_7 - -
- 2093680..2093742 + 63 NuclAT_7 - -
- 2093680..2093742 + 63 NuclAT_7 - -
- 2093680..2093742 + 63 NuclAT_7 - -
- 2093680..2093742 + 63 NuclAT_8 - -
- 2093680..2093742 + 63 NuclAT_8 - -
- 2093680..2093742 + 63 NuclAT_8 - -
- 2093680..2093742 + 63 NuclAT_8 - -
- 2093680..2093742 + 63 NuclAT_9 - -
- 2093680..2093742 + 63 NuclAT_9 - -
- 2093680..2093742 + 63 NuclAT_9 - -
- 2093680..2093742 + 63 NuclAT_9 - -
- 2093680..2093743 + 64 NuclAT_19 - -
- 2093680..2093743 + 64 NuclAT_19 - -
- 2093680..2093743 + 64 NuclAT_19 - -
- 2093680..2093743 + 64 NuclAT_19 - -
- 2093680..2093743 + 64 NuclAT_20 - -
- 2093680..2093743 + 64 NuclAT_20 - -
- 2093680..2093743 + 64 NuclAT_20 - -
- 2093680..2093743 + 64 NuclAT_20 - -
- 2093680..2093743 + 64 NuclAT_21 - -
- 2093680..2093743 + 64 NuclAT_21 - -
- 2093680..2093743 + 64 NuclAT_21 - -
- 2093680..2093743 + 64 NuclAT_21 - -
- 2093680..2093743 + 64 NuclAT_22 - -
- 2093680..2093743 + 64 NuclAT_22 - -
- 2093680..2093743 + 64 NuclAT_22 - -
- 2093680..2093743 + 64 NuclAT_22 - -
- 2093680..2093743 + 64 NuclAT_23 - -
- 2093680..2093743 + 64 NuclAT_23 - -
- 2093680..2093743 + 64 NuclAT_23 - -
- 2093680..2093743 + 64 NuclAT_23 - -
- 2093680..2093743 + 64 NuclAT_24 - -
- 2093680..2093743 + 64 NuclAT_24 - -
- 2093680..2093743 + 64 NuclAT_24 - -
- 2093680..2093743 + 64 NuclAT_24 - -
GBG22_RS10155 2094033..2095133 - 1101 WP_001313768.1 sodium-potassium/proton antiporter ChaA -
GBG22_RS10160 2095403..2095633 + 231 WP_001146444.1 putative cation transport regulator ChaB -
GBG22_RS10165 2095791..2096486 + 696 WP_000632706.1 glutathione-specific gamma-glutamylcyclotransferase -
GBG22_RS10170 2096530..2096883 - 354 WP_001169659.1 DsrE/F sulfur relay family protein YchN -
GBG22_RS10175 2097068..2098462 + 1395 WP_000086194.1 inverse autotransporter invasin YchO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 3983.80 Da        Isoelectric Point: 11.4779

>T141423 WP_000170954.1 NZ_CP045206:c2093627-2093520 [Escherichia coli]
MTLAQFAMIFWHDLAAPILAGIITAAIVGWWRNRK

Download         Length: 108 bp

>T141423 NZ_CP059959:1858098-1858403 [Pectobacterium brasiliense]
ATGCCACAAGTGATTGTTTCAGAACGCGCAAGACGTGATTTGCAGCGTCTGCAGGATTTTCTAAAAAACAAAAATGCGCT
GGCTGCGAAAAAGGCGGCTGAAGTTTTGATTCGGGGCATTCGTCAGTTAGAAGCGCTGCCGAATATCGGGCGACCCGTTG
AACATCTCCCTCTTGAATATCAGGAACTGGTGATCGAATTCGGCAGCAGCGGGTACGTGATGCTTTACCGCCATGATGAA
CTGACTGACAGAGTGGTGATCCTGACCGTCAAGCATCAAAAAGAAGCCGGTTACCAAAACCCTTAA

Antitoxin


Download         Length: 62 bp

>AT141423 NZ_CP045206:2093680-2093741 [Escherichia coli]
TGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U9LPE9

Antitoxin

Download structure file

References