Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/HigB-HigA |
| Location | 3880521..3881195 | Replicon | chromosome |
| Accession | NZ_CP044074 | ||
| Organism | Pseudomonas oryzihabitans strain FDAARGOS_657 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | - |
| Locus tag | FOB65_RS19425 | Protein ID | WP_144945649.1 |
| Coordinates | 3880917..3881195 (-) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | FOB65_RS19420 | Protein ID | WP_027598623.1 |
| Coordinates | 3880521..3880823 (-) | Length | 101 a.a. |
Genomic Context
Location: 3875891..3876829 (939 bp)
Type: Others
Protein ID: WP_027600430.1
Type: Others
Protein ID: WP_027600430.1
Location: 3877100..3878038 (939 bp)
Type: Others
Protein ID: WP_027598620.1
Type: Others
Protein ID: WP_027598620.1
Location: 3878155..3878997 (843 bp)
Type: Others
Protein ID: WP_027598621.1
Type: Others
Protein ID: WP_027598621.1
Location: 3879001..3880233 (1233 bp)
Type: Others
Protein ID: WP_150340202.1
Type: Others
Protein ID: WP_150340202.1
Location: 3880521..3880823 (303 bp)
Type: Antitoxin
Protein ID: WP_027598623.1
Type: Antitoxin
Protein ID: WP_027598623.1
Location: 3880917..3881195 (279 bp)
Type: Toxin
Protein ID: WP_144945649.1
Type: Toxin
Protein ID: WP_144945649.1
Location: 3881450..3882307 (858 bp)
Type: Others
Protein ID: WP_077171181.1
Type: Others
Protein ID: WP_077171181.1
Location: 3882406..3883035 (630 bp)
Type: Others
Protein ID: WP_007160039.1
Type: Others
Protein ID: WP_007160039.1
Location: 3883051..3886071 (3021 bp)
Type: Others
Protein ID: WP_027598627.1
Type: Others
Protein ID: WP_027598627.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB65_RS19400 | 3875891..3876829 | + | 939 | WP_027600430.1 | choline ABC transporter substrate-binding protein | - |
| FOB65_RS19405 | 3877100..3878038 | + | 939 | WP_027598620.1 | choline ABC transporter substrate-binding protein | - |
| FOB65_RS19410 | 3878155..3878997 | + | 843 | WP_027598621.1 | choline ABC transporter permease subunit | - |
| FOB65_RS19415 | 3879001..3880233 | + | 1233 | WP_150340202.1 | choline ABC transporter ATP-binding protein | - |
| FOB65_RS19420 | 3880521..3880823 | - | 303 | WP_027598623.1 | HigA family addiction module antidote protein | Antitoxin |
| FOB65_RS19425 | 3880917..3881195 | - | 279 | WP_144945649.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| FOB65_RS19430 | 3881450..3882307 | - | 858 | WP_077171181.1 | formyltetrahydrofolate deformylase | - |
| FOB65_RS19435 | 3882406..3883035 | - | 630 | WP_007160039.1 | sarcosine oxidase subunit gamma family protein | - |
| FOB65_RS19440 | 3883051..3886071 | - | 3021 | WP_027598627.1 | sarcosine oxidase subunit alpha | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10650.12 Da Isoelectric Point: 9.2972
>T140003 WP_144945649.1 NZ_CP044074:c3881195-3880917 [Pseudomonas oryzihabitans]
MILSFKCKDTQALFTDGNNRKWSQIANVATRRLTALSEAVELRDLRSPPGNRLELLEGKRKGQHSIRINDQWRICFEWTP
QGPANVEIVDYH
MILSFKCKDTQALFTDGNNRKWSQIANVATRRLTALSEAVELRDLRSPPGNRLELLEGKRKGQHSIRINDQWRICFEWTP
QGPANVEIVDYH
Download Length: 279 bp
>T140003 NZ_CP058874:354462-354737 [Escherichia coli]
ATGAGAACCCAGGTACAGGCTTTACGGAAGAAACAAAAAAATACATTGGATCAAATATTTAAATCTCCTGTTCCTCAAGG
GATTAAGTGGTCTGATATAGAGTCACTGGTTAAAGCATTAGGCGGAGAAATTAAGGAAGGAAGAGGTTCGCGTTGTAAGT
TCATACTAAATATGAGCGTTGCGTGTTTCCATCGGCCTCATCCGTCGCCAGATACCGATAAAGGCGCTGTAGAAAGCGTT
CGTGACTGGTTACTAAGTATAGGGGTAAAACCATGA
ATGAGAACCCAGGTACAGGCTTTACGGAAGAAACAAAAAAATACATTGGATCAAATATTTAAATCTCCTGTTCCTCAAGG
GATTAAGTGGTCTGATATAGAGTCACTGGTTAAAGCATTAGGCGGAGAAATTAAGGAAGGAAGAGGTTCGCGTTGTAAGT
TCATACTAAATATGAGCGTTGCGTGTTTCCATCGGCCTCATCCGTCGCCAGATACCGATAAAGGCGCTGTAGAAAGCGTT
CGTGACTGGTTACTAAGTATAGGGGTAAAACCATGA
Antitoxin
Download Length: 101 a.a. Molecular weight: 10988.78 Da Isoelectric Point: 7.2024
>AT140003 WP_027598623.1 NZ_CP044074:c3880823-3880521 [Pseudomonas oryzihabitans]
MLTNGMRPVHPGEILREDYLVPMNMTPSALARALGVSAPTVNDVVLERRGISADMALRLAAAFDTTPNFWMGLQATYELR
VAETSKGELIRQQVKPLHVA
MLTNGMRPVHPGEILREDYLVPMNMTPSALARALGVSAPTVNDVVLERRGISADMALRLAAAFDTTPNFWMGLQATYELR
VAETSKGELIRQQVKPLHVA
Download Length: 303 bp
>AT140003 NZ_CP058874:354734-355093 [Escherichia coli]
ATGATCAAACTGAAGACACCAAACTCTATGGAGATTGCCGGGCAACCTGCAGTTATCACTTACGTGCCAGAACTGAATGC
ATTTCGTGGCAAATTCCTGGGCTTGTCAGGTTATTGTGATTTTGTCTCTGACAGTATTCAGGGGCTGCAAAAAGAAGGGG
AGCTTTCCCTGCGAGAGTATCTTGAGGATTGTAAAGCTGCGGGTATTGAGCCGTATGCGCGTACAGAAAAGATTAAGACC
TTTACATTACGCTATCCAGAATCGCTGAGTGAACGCCTTACTAATGCGGCTGCGCAGCAACAAGTCTCTGTAAATACTTA
TATTATTGAAACGCTAAATGAGCGTTTGAATCATTTATAA
ATGATCAAACTGAAGACACCAAACTCTATGGAGATTGCCGGGCAACCTGCAGTTATCACTTACGTGCCAGAACTGAATGC
ATTTCGTGGCAAATTCCTGGGCTTGTCAGGTTATTGTGATTTTGTCTCTGACAGTATTCAGGGGCTGCAAAAAGAAGGGG
AGCTTTCCCTGCGAGAGTATCTTGAGGATTGTAAAGCTGCGGGTATTGAGCCGTATGCGCGTACAGAAAAGATTAAGACC
TTTACATTACGCTATCCAGAATCGCTGAGTGAACGCCTTACTAATGCGGCTGCGCAGCAACAAGTCTCTGTAAATACTTA
TATTATTGAAACGCTAAATGAGCGTTTGAATCATTTATAA