Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 2267173..2267675 | Replicon | chromosome |
| Accession | NZ_CP043825 | ||
| Organism | Escherichia coli strain RM8082 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | F1745_RS11620 | Protein ID | WP_000767829.1 |
| Coordinates | 2267173..2267427 (-) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | F1745_RS11625 | Protein ID | WP_001259255.1 |
| Coordinates | 2267424..2267675 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1745_RS11590 (2262190) | 2262190..2262417 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| F1745_RS11595 (2262431) | 2262431..2263488 | - | 1058 | Protein_2273 | thiosulfate utilization transporter TsuA/YeeE | - |
| F1745_RS11600 (2263667) | 2263667..2265025 | - | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| F1745_RS11605 (2265015) | 2265015..2265077 | - | 63 | WP_010723108.1 | membrane protein YoeI | - |
| F1745_RS11610 (2265291) | 2265291..2266220 | - | 930 | WP_000803351.1 | LysR substrate-binding domain-containing protein | - |
| F1745_RS11615 (2266266) | 2266266..2267090 | - | 825 | WP_000754758.1 | SDR family oxidoreductase | - |
| F1745_RS11620 (2267173) | 2267173..2267427 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| F1745_RS11625 (2267424) | 2267424..2267675 | - | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| F1745_RS11630 (2267958) | 2267958..2268008 | + | 51 | WP_001364200.1 | his operon leader peptide | - |
| F1745_RS11635 (2268154) | 2268154..2269053 | + | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
| F1745_RS11640 (2269059) | 2269059..2270363 | + | 1305 | WP_001542955.1 | histidinol dehydrogenase | - |
| F1745_RS11645 (2270360) | 2270360..2271430 | + | 1071 | WP_032151756.1 | histidinol-phosphate transaminase | - |
| F1745_RS11650 (2271430) | 2271430..2272497 | + | 1068 | WP_032214959.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T139310 WP_000767829.1 NZ_CP043825:c2267427-2267173 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T139310 NZ_CP058624:1616104-1616412 [Treponema denticola]
ATGAGAATTATAGAAACGCCTGTTTTCACAAAACAAATAAATAGGCTACTGGACGAAGATACATATAAACAATTTAAAGA
ATATCTAGTATGTAATCCATTGAAAGGTAAATTGATTAAGGGTGGCGGCGGAATACGAAAAATAAGATGGAGCAAAAAGA
ATACTGGAAAAAGCGGCGGTATTAGGATTATTTATTTTATAAAAACTGAAACAAAGATATATTTGTTGTTTGCTTATTCA
AAAAGTGATGCAGAGAGCATTACAAAAAAACAAATAAATATGTTGGCAAGTTTTATTAAAGGTTTATAA
ATGAGAATTATAGAAACGCCTGTTTTCACAAAACAAATAAATAGGCTACTGGACGAAGATACATATAAACAATTTAAAGA
ATATCTAGTATGTAATCCATTGAAAGGTAAATTGATTAAGGGTGGCGGCGGAATACGAAAAATAAGATGGAGCAAAAAGA
ATACTGGAAAAAGCGGCGGTATTAGGATTATTTATTTTATAAAAACTGAAACAAAGATATATTTGTTGTTTGCTTATTCA
AAAAGTGATGCAGAGAGCATTACAAAAAAACAAATAAATATGTTGGCAAGTTTTATTAAAGGTTTATAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT139310 WP_001259255.1 NZ_CP043825:c2267675-2267424 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT139310 NZ_CP058624:1616422-1616730 [Treponema denticola]
ATGTTTAAAAGGAAAAAAATGAGTGATGAGATGTTTGCCGAATTACTCCAAAGCGTAAAGGAAGCTGTTTTAATTGAAAA
AGGAGAAATTCCCCCCTCCAGAGTTTTTGAAATAGAGCCTTTGGATATTGCCAAAATACGCAGTAAGACAAATAAAACAC
AAGAAGAATTTGCATCTATGCTTAATATCAGTATCGGCACCTTGCGAAACTGGGAGCAAGGCAGGCGTAAACCTGACGGG
GCAGCCTTGTCTCTACTTAAAATTGTTTCGGCTAATCCTCAATATGTGGAAAGTGTGCTGCAGGGATAA
ATGTTTAAAAGGAAAAAAATGAGTGATGAGATGTTTGCCGAATTACTCCAAAGCGTAAAGGAAGCTGTTTTAATTGAAAA
AGGAGAAATTCCCCCCTCCAGAGTTTTTGAAATAGAGCCTTTGGATATTGCCAAAATACGCAGTAAGACAAATAAAACAC
AAGAAGAATTTGCATCTATGCTTAATATCAGTATCGGCACCTTGCGAAACTGGGAGCAAGGCAGGCGTAAACCTGACGGG
GCAGCCTTGTCTCTACTTAAAATTGTTTCGGCTAATCCTCAATATGTGGAAAGTGTGCTGCAGGGATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|