Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | rlegTA/AbiEii-AbiEi |
| Location | 2786189..2787642 | Replicon | chromosome |
| Accession | NZ_CP043403 | ||
| Organism | Xanthomonas oryzae pv. oryzicola strain GX01 | ||
Toxin (Protein)
| Gene name | rlegT | Uniprot ID | A0A5C2EYQ5 |
| Locus tag | XOCgx_RS13150 | Protein ID | WP_047339759.1 |
| Coordinates | 2786189..2787040 (-) | Length | 284 a.a. |
Antitoxin (Protein)
| Gene name | rlegA | Uniprot ID | A0A0C5V250 |
| Locus tag | XOCgx_RS13155 | Protein ID | WP_024710981.1 |
| Coordinates | 2787037..2787642 (-) | Length | 202 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XOCgx_RS13120 | 2781229..2782191 | - | 963 | WP_044751530.1 | IS110 family transposase | - |
| XOCgx_RS23180 | 2782416..2782718 | - | 303 | WP_047339762.1 | hypothetical protein | - |
| XOCgx_RS13135 | 2783591..2783932 | - | 342 | WP_050585837.1 | ParB N-terminal domain-containing protein | - |
| XOCgx_RS13140 | 2783929..2785495 | - | 1567 | Protein_2373 | recombinase family protein | - |
| XOCgx_RS13145 | 2785632..2786102 | - | 471 | WP_149621647.1 | hypothetical protein | - |
| XOCgx_RS13150 | 2786189..2787040 | - | 852 | WP_047339759.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
| XOCgx_RS13155 | 2787037..2787642 | - | 606 | WP_024710981.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin |
| XOCgx_RS13160 | 2787886..2788233 | - | 348 | WP_149621648.1 | hypothetical protein | - |
| XOCgx_RS13165 | 2788184..2788696 | - | 513 | WP_161600049.1 | helix-turn-helix domain-containing protein | - |
| XOCgx_RS23450 | 2788997..2789173 | + | 177 | WP_014503024.1 | hypothetical protein | - |
| XOCgx_RS13170 | 2789485..2790570 | + | 1086 | WP_048485514.1 | sensor domain-containing diguanylate cyclase | - |
| XOCgx_RS13175 | 2790613..2791122 | - | 510 | WP_014503022.1 | chemotaxis protein CheW | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2768187..2795933 | 27746 | |
| flank | IS/Tn | - | - | 2781229..2782191 | 962 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 284 a.a. Molecular weight: 31056.91 Da Isoelectric Point: 7.0657
>T138661 WP_047339759.1 NZ_CP043403:c2787040-2786189 [Xanthomonas oryzae pv. oryzicola]
MSNVAASVRARLRGVAKAQGVDFNQVLVRFALERILYRLSQSEHADRFLLKGALLFTLWYDMPHRATRDADLLGFGASDL
ESVAQTFRDIASVAVDDGIVFDPASVVAEEIRKDAGYAGARILIGGELAKARCRTQIDVGFGDAVTPAPVHSVYPVLLED
LPAPRLRTYPVYTVIAEKLHAIALLGMTNSRMKDYLDLSVLLERESLDIDLLAQAVKATFERRGMAVPAALPIGMTDEFA
HDTSRQALWQAFLKKNELAPEPLAAIVVRLRAALEPALHRAAR
MSNVAASVRARLRGVAKAQGVDFNQVLVRFALERILYRLSQSEHADRFLLKGALLFTLWYDMPHRATRDADLLGFGASDL
ESVAQTFRDIASVAVDDGIVFDPASVVAEEIRKDAGYAGARILIGGELAKARCRTQIDVGFGDAVTPAPVHSVYPVLLED
LPAPRLRTYPVYTVIAEKLHAIALLGMTNSRMKDYLDLSVLLERESLDIDLLAQAVKATFERRGMAVPAALPIGMTDEFA
HDTSRQALWQAFLKKNELAPEPLAAIVVRLRAALEPALHRAAR
Download Length: 852 bp
>T138661 NZ_CP058193:c1378-1070 [Enterobacter hormaechei]
ATGCAGTTCACGGTTTACCGCAATAATGGCAATAGTCGGGCTTATCCTTACCTGCTGGACGTGCAGAGCGATATTATCGG
CGAACTCAAAACGCGACTGGTGATTCCCCTGTATTCGCTGAATGAGTTCAGTGGACGGCCTGCTCGTCGTCTTAATCCAG
TGCTGAATGTGGAGGATGAGGATTATCTGGTCATGACTCATGAAATGGCAAGCGTAAGGCTGTCACAACTGGGGGATGAG
GTGGTAAGCGTTCGGGAACACCGCGAGGTCATCAAGAACGCTCTGGATTTTCTGCTGGATGGGTTCTGA
ATGCAGTTCACGGTTTACCGCAATAATGGCAATAGTCGGGCTTATCCTTACCTGCTGGACGTGCAGAGCGATATTATCGG
CGAACTCAAAACGCGACTGGTGATTCCCCTGTATTCGCTGAATGAGTTCAGTGGACGGCCTGCTCGTCGTCTTAATCCAG
TGCTGAATGTGGAGGATGAGGATTATCTGGTCATGACTCATGAAATGGCAAGCGTAAGGCTGTCACAACTGGGGGATGAG
GTGGTAAGCGTTCGGGAACACCGCGAGGTCATCAAGAACGCTCTGGATTTTCTGCTGGATGGGTTCTGA
Antitoxin
Download Length: 202 a.a. Molecular weight: 22257.92 Da Isoelectric Point: 9.9253
>AT138661 WP_024710981.1 NZ_CP043403:c2787642-2787037 [Xanthomonas oryzae pv. oryzicola]
MLSDTHTQRVLDLASQKGLLRASDLDAINAPRVVLTRLTAAGVLERVGRGLYRLPDAQGSEFESLAAIATKVPQAVFCLL
TALQFHELTTQLPRQIWIAMPRGSHAPRIGYPPVKMVQMTGDVYAAGIEEHLRDGVRLRVYGAAKTVVDCFKHRNKIGLD
VALEALKDVRAKRKATADDLWRFATVCRVANVMRPYLEAVE
MLSDTHTQRVLDLASQKGLLRASDLDAINAPRVVLTRLTAAGVLERVGRGLYRLPDAQGSEFESLAAIATKVPQAVFCLL
TALQFHELTTQLPRQIWIAMPRGSHAPRIGYPPVKMVQMTGDVYAAGIEEHLRDGVRLRVYGAAKTVVDCFKHRNKIGLD
VALEALKDVRAKRKATADDLWRFATVCRVANVMRPYLEAVE
Download Length: 606 bp
>AT138661 NZ_CP058193:c1620-1381 [Enterobacter hormaechei]
ATGACAACATCAGTCATGCGCCATAAAAAAACCGTCAGTGTGACACTCGAGCCAGCCCTTTTGCGTCAGGCACGCGAAGC
GGGGATCAATCTGTCTGCTACATTGGCCACTGCCCTGAGACACGAGATACGCGAGTCTGAATCTGAGCGCTGGAAGCGTA
CCAATCGTAAGGCAATTCAGGAATTGAACCGTATTACGGACGAACACGGCTTACTCTCTGACGATTACAGGACGTTCTGA
ATGACAACATCAGTCATGCGCCATAAAAAAACCGTCAGTGTGACACTCGAGCCAGCCCTTTTGCGTCAGGCACGCGAAGC
GGGGATCAATCTGTCTGCTACATTGGCCACTGCCCTGAGACACGAGATACGCGAGTCTGAATCTGAGCGCTGGAAGCGTA
CCAATCGTAAGGCAATTCAGGAATTGAACCGTATTACGGACGAACACGGCTTACTCTCTGACGATTACAGGACGTTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A5C2EYQ5 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0C5V250 |