Detailed information of TA system TA137339

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/RelE-HTH
• Location: 2939527..2940140
• Replicon: chromosome
• Accession: NZ_CP043162
• Organism: Bordetella parapertussis strain H104

Toxin (Protein)

• Gene name: higB
• Uniprot ID: K0MEM3
• Locus tag: FYA53_RS14020
• Protein ID: WP_003811545.1
• Coordinates: 2939527..2939838 (+)
• Length: 104 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: FYA53_RS14025
• Protein ID: WP_003811547.1
• Coordinates: 2939841..2940140 (+)
• Length: 100 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FYA53_RS13995	2934679..2935233	-	555	Protein_2742	LamB/YcsF family protein	-
FYA53_RS14000	2935230..2936624	-	1395	WP_003811536.1	arylsulfatase	-
FYA53_RS14005	2936639..2937601	-	963	WP_041937418.1	tripartite tricarboxylate transporter substrate binding protein	-
FYA53_RS14010	2937718..2938671	+	954	WP_041937234.1	LysR family transcriptional regulator	-
FYA53_RS14015	2938790..2939413	+	624	WP_003811542.1	glutathione S-transferase family protein	-
FYA53_RS14020	2939527..2939838	+	312	WP_003811545.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
FYA53_RS14025	2939841..2940140	+	300	WP_003811547.1	helix-turn-helix domain-containing protein	Antitoxin
FYA53_RS14030	2940154..2942745	-	2592	WP_065956700.1	autotransporter domain-containing protein	-
FYA53_RS14035	2942875..2943549	+	675	WP_010928712.1	response regulator transcription factor	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-2 (42-102)

Antitoxin

• Cro/C1-type helix-turn-helix domain (39-96)

Sequences

Toxin

Protein

• Length: 104 a.a.
• Molecular weight: 11810.72 Da
• Isoelectric Point: 8.8245

>T137339 WP_003811545.1 NZ_CP043162:2939527-2939838 [Bordetella parapertussis]
MEFIETPIFTQLITALLSDEEYSRLQQLLIDNPERGDLLRGGGGIRKMRYGRQGTGKRGGIRVIYYWISQDCQIYMLAAY
AKSKKINLTPDEIAALRELVKEL

Nucleotide

• Length: 312 bp

>T137339 NZ_CP056698:c13439-12945 [Escherichia marmotae]
ATGGAATACTTAGAAATAAACGGTTGGAAAATCTGCTTTCACGAGTGTTTTTTAAGGCAGATTACAGGACTAATGAAGAA
GGTGGCAGAGTTAAAGGCTTCTAAACCACTGGAATATCATAAGAAAAAGGAAACTAAACTTCTTGTTGCGATCGAGCGTG
TTATAGAGGAAAGGATAACCGCTAACCCGCTTGATCCACAGTTTCGGCAGGGGAATACTTTAGGCGAAGAATACAAACAC
TGGTTCCGGGCAAAATTTTTGATGCAGTTCCGTTTGTTTTATCGTTGTAGCCAGGAACATAAAACAATTGTTATTGGCTG
GGTAAATGGATTTGACACGCTTCGTGCTTATGATTCCAGGACGGATGCCTATAAGGTATTTGGTGAAATGTTGAAAGCTG
GAAATCCACCGGATGACTGGGATACCCTTCTCTGTGAGGCTGGTAAAGCTACAGCGACCACCAATATGGTTGATTTTCTC
ACAAAGCGTATTTGA

Antitoxin

Protein

• Length: 100 a.a.
• Molecular weight: 10946.70 Da
• Isoelectric Point: 11.2467

>AT137339 WP_003811547.1 NZ_CP043162:2939841-2940140 [Bordetella parapertussis]
MKKDNTVFNDLQASLKQAVAIRQGKMPPSRVFKVETVDVKATREKTHMSQTEFAKAIHVSVRTLQNWEQGHRNPTGPAVA
LLKIVASAPDIAVRALRTA

Nucleotide

• Length: 300 bp

>AT137339 NZ_CP056698:c13806-13462 [Escherichia marmotae]
ATGGCTACTCAAATTTTAAATAGTGCAGAAGTGTCACTGCGTGCAGAGTCACGACTTACTGAACGCAGTCAGACGACGAT
CCCGGCAGTAATACGCGATGCTTTGCATCTCAAGCCCGGTGAGTATATTCATTACACTTTACTTGCAGGTGGTAAGGTCA
TCATGTCACGACAGAATGAAGAACAGGACGACCCTGTGATTTCGCAGTTTTTGACTTTTCTTGAAAACGACATGAAAAAG
AACCCACAGAAGATTGCTCCAGTTCCGACAATGTTCTGGGAAAGCATGAAAGCATTAACTGCCGGAATTAATGTTGATTT
AGACGCACCACTTACCGAAGATTAA

Structures

Toxin

• AlphaFold DB: K0MEM3