Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-YefM |
| Location | 1932851..1933353 | Replicon | chromosome |
| Accession | NZ_CP042899 | ||
| Organism | Escherichia coli strain CFSAN061763 | ||
Toxin (Protein)
| Gene name | yoeB | Uniprot ID | U9YDH0 |
| Locus tag | CA897_RS09205 | Protein ID | WP_000767829.1 |
| Coordinates | 1933099..1933353 (+) | Length | 85 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | S1Q063 |
| Locus tag | CA897_RS09200 | Protein ID | WP_001259255.1 |
| Coordinates | 1932851..1933102 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA897_RS09175 (1928029) | 1928029..1929096 | - | 1068 | WP_001563933.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| CA897_RS09180 (1929096) | 1929096..1930166 | - | 1071 | WP_001682999.1 | histidinol-phosphate transaminase | - |
| CA897_RS09185 (1930163) | 1930163..1931467 | - | 1305 | WP_042031741.1 | histidinol dehydrogenase | - |
| CA897_RS09190 (1931473) | 1931473..1932372 | - | 900 | WP_000131782.1 | ATP phosphoribosyltransferase | - |
| CA897_RS09195 (1932518) | 1932518..1932568 | - | 51 | WP_001364200.1 | his operon leader peptide | - |
| CA897_RS09200 (1932851) | 1932851..1933102 | + | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | Antitoxin |
| CA897_RS09205 (1933099) | 1933099..1933353 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | Toxin |
| CA897_RS09210 (1933436) | 1933436..1934260 | + | 825 | WP_000754749.1 | SDR family oxidoreductase | - |
| CA897_RS09215 (1934306) | 1934306..1935235 | + | 930 | WP_000803351.1 | LysR substrate-binding domain-containing protein | - |
| CA897_RS09220 (1935450) | 1935450..1935512 | + | 63 | WP_010723108.1 | membrane protein YoeI | - |
| CA897_RS09225 (1935502) | 1935502..1936860 | + | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| CA897_RS09230 (1937039) | 1937039..1938097 | + | 1059 | WP_000492315.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| CA897_RS09235 (1938111) | 1938111..1938338 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 85 a.a. Molecular weight: 10183.58 Da Isoelectric Point: 8.0353
>T136518 WP_000767829.1 NZ_CP042899:1933099-1933353 [Escherichia coli]
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
VKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGKPEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAAC
RYHY
Download Length: 255 bp
>T136518 NZ_CP056118:c1825515-1825195 [Enterobacter sp. DSM 30060]
ATGCATATTTCGACTGTACCGAAAACAGTGACGGTTTCGTCACGCCTGTCTCCTGTCCAAGTTTGGCAAAAACTATTAAC
GTATATTTTAGAGCATCATTACGGCCTCACGATCAACGACACACCGTTCAGTAACGATACGACGATTCAGGAACATATAG
AGGCGGGAGTGAATCTTACTGATGCTGTTAATTTCCTTGTGGAACGATTCGAGCTTGTGCGCATTGACCAGAAGAGTTTC
TCCTGGCAGGATCAAGAACCCTGGATAACATCTTTGGATGTTCATCGGGCACAGTCCAACCTTGGCTTGAAACGCCCATA
A
ATGCATATTTCGACTGTACCGAAAACAGTGACGGTTTCGTCACGCCTGTCTCCTGTCCAAGTTTGGCAAAAACTATTAAC
GTATATTTTAGAGCATCATTACGGCCTCACGATCAACGACACACCGTTCAGTAACGATACGACGATTCAGGAACATATAG
AGGCGGGAGTGAATCTTACTGATGCTGTTAATTTCCTTGTGGAACGATTCGAGCTTGTGCGCATTGACCAGAAGAGTTTC
TCCTGGCAGGATCAAGAACCCTGGATAACATCTTTGGATGTTCATCGGGCACAGTCCAACCTTGGCTTGAAACGCCCATA
A
Antitoxin
Download Length: 84 a.a. Molecular weight: 9307.58 Da Isoelectric Point: 4.7954
>AT136518 WP_001259255.1 NZ_CP042899:1932851-1933102 [Escherichia coli]
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEEYNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKD
IIE
Download Length: 252 bp
>AT136518 NZ_CP042899:1932851-1933102 [Escherichia coli]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGTTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCAAAGGAACAGAAAAGGAC
ATTATTGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|