Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 2683579..2684087 Replicon chromosome
Accession NZ_CP042652
Organism Pseudoarcobacter acticola strain KCTC 52212

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag AACT_RS13710 Protein ID WP_172127797.1
Coordinates 2683827..2684087 (+) Length 87 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag AACT_RS13705 Protein ID WP_172127795.1
Coordinates 2683579..2683830 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AACT_RS13680 2678679..2679302 + 624 WP_172127785.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
AACT_RS13685 2679328..2679639 + 312 WP_172127787.1 dihydroneopterin aldolase -
AACT_RS13690 2680229..2681407 + 1179 WP_172127789.1 porin -
AACT_RS13695 2681556..2682182 + 627 WP_172127791.1 c-type cytochrome -
AACT_RS13700 2682324..2683451 + 1128 WP_172127793.1 porin -
AACT_RS13705 2683579..2683830 + 252 WP_172127795.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
AACT_RS13710 2683827..2684087 + 261 WP_172127797.1 Txe/YoeB family addiction module toxin Toxin
AACT_RS13715 2684624..2685718 + 1095 WP_172127799.1 peptide chain release factor 2 -
AACT_RS13720 2685745..2688114 - 2370 WP_172127801.1 PD-(D/E)XK nuclease family protein -
AACT_RS13725 2688104..2688661 - 558 WP_172127803.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10443.00 Da        Isoelectric Point: 8.8240

>T136027 WP_172127797.1 NZ_CP042652:2683827-2684087 [Pseudoarcobacter acticola]
MIIGFADEAWEDYQYWSLNDKNIFKRINLLIKDIKRNPFDANGLGKPERLKENFQGYFSRRITSEHRLVYKIIDDLIIIA
QCRYHY

Download         Length: 261 bp

>T136027 NZ_CP042652:2683827-2684087 [Pseudoarcobacter acticola]
ATGATTATTGGATTTGCAGATGAAGCATGGGAAGATTATCAATATTGGTCTTTAAATGATAAAAATATATTCAAAAGAAT
AAATTTATTAATCAAAGATATAAAAAGAAATCCCTTCGATGCTAATGGACTTGGAAAACCAGAAAGACTAAAAGAAAATT
TTCAAGGATACTTTTCAAGAAGAATAACATCAGAACACAGACTAGTATATAAAATAATCGATGATTTGATAATCATAGCT
CAATGTAGATATCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9848.10 Da        Isoelectric Point: 4.5112

>AT136027 WP_172127795.1 NZ_CP042652:2683579-2683830 [Pseudoarcobacter acticola]
MQAVFYSQARNNLREIINKVCDDFDEYIITTKDEKSVVLISYEEYSSMKETIYLLSSKNNRDRLNDAVEQIENSKFLKKE
IDL

Download         Length: 252 bp

>AT136027 NZ_CP042652:2683579-2683830 [Pseudoarcobacter acticola]
ATGCAAGCAGTTTTTTACTCACAAGCAAGAAATAATCTAAGAGAAATTATAAATAAAGTATGTGATGATTTTGATGAATA
TATTATTACTACAAAAGATGAGAAATCTGTAGTTTTGATTTCATATGAAGAGTATAGTTCAATGAAAGAAACAATATATC
TTTTATCTTCAAAAAATAATAGAGATAGATTAAATGATGCCGTAGAACAAATAGAAAACTCAAAATTTCTTAAAAAAGAA
ATTGATTTATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References