135486

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2546627..2547150 Replicon chromosome
Accession NZ_CP042348
Organism Staphylococcus aureus strain BSN9R

Toxin (Protein)


Gene name yoeB Uniprot ID X5DYX7
Locus tag FSN22_RS13030 Protein ID WP_000074048.1
Coordinates 2546627..2546893 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag FSN22_RS13035 Protein ID WP_000587616.1
Coordinates 2546893..2547150 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FSN22_RS13010 2541934..2543121 - 1188 WP_000026194.1 MFS transporter -
FSN22_RS13015 2543517..2544293 - 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
FSN22_RS13020 2544286..2544948 - 663 WP_000923520.1 ATP-binding cassette domain-containing protein -
FSN22_RS13025 2545196..2546272 - 1077 WP_001076671.1 M42 family metallopeptidase -
FSN22_RS13030 2546627..2546893 - 267 WP_000074048.1 Txe/YoeB family addiction module toxin Toxin
FSN22_RS13035 2546893..2547150 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
FSN22_RS13040 2547256..2547450 - 195 WP_001790145.1 hypothetical protein -
FSN22_RS13045 2547509..2547964 + 456 WP_000732082.1 DUF1307 domain-containing protein -
FSN22_RS13050 2548132..2549709 - 1578 WP_000143503.1 FMN-binding glutamate synthase family protein -
FSN22_RS13055 2549904..2550653 + 750 WP_000072444.1 hypothetical protein -
FSN22_RS13060 2550877..2552070 - 1194 WP_000675401.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10648.23 Da        Isoelectric Point: 10.1384

>T135486 WP_000074048.1 NZ_CP042348:c2546893-2546627 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T135486 NZ_CP042348:c2546893-2546627 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT135486 WP_000587616.1 NZ_CP042348:c2547150-2546893 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT135486 NZ_CP042348:c2547150-2546893 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7V6W
PDB 7V5Y
PDB 7V5Z

Antitoxin

Source ID Structure
AlphaFold DB W8TQT5

References