Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 470558..471075 | Replicon | chromosome |
Accession | NZ_CP042157 | ||
Organism | Staphylococcus aureus strain B3-17D |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | A0A3A3ATA4 |
Locus tag | FP481_RS02570 | Protein ID | WP_000113265.1 |
Coordinates | 470558..470824 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | T1YB60 |
Locus tag | FP481_RS02575 | Protein ID | WP_000584499.1 |
Coordinates | 470824..471075 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FP481_RS02540 | 465986..466522 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
FP481_RS02545 | 466756..467580 | - | 825 | WP_000572038.1 | formate/nitrite transporter family protein | - |
FP481_RS02550 | 467797..467979 | - | 183 | WP_000230292.1 | hypothetical protein | - |
FP481_RS02555 | 468063..468530 | - | 468 | WP_000153347.1 | SRPBCC domain-containing protein | - |
FP481_RS02560 | 468716..470263 | - | 1548 | WP_000727774.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
FP481_RS02565 | 470452..470523 | - | 72 | Protein_486 | hypothetical protein | - |
FP481_RS02570 | 470558..470824 | - | 267 | WP_000113265.1 | Txe/YoeB family addiction module toxin | Toxin |
FP481_RS02575 | 470824..471075 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
FP481_RS02580 | 471240..471341 | - | 102 | Protein_489 | hypothetical protein | - |
FP481_RS02585 | 471348..471947 | - | 600 | WP_000162810.1 | DsbA family protein | - |
FP481_RS02590 | 471966..472328 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
FP481_RS02595 | 472583..473833 | + | 1251 | WP_001012225.1 | FemA/FemB family glycyltransferase FmhA | - |
FP481_RS02600 | 473930..474661 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
FP481_RS02605 | 474658..475377 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10436.96 Da Isoelectric Point: 10.0573
>T134910 WP_000113265.1 NZ_CP042157:c470824-470558 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T134910 NZ_CP042157:c470824-470558 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT134910 WP_000584499.1 NZ_CP042157:c471075-470824 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT134910 NZ_CP042157:c471075-470824 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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