Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | unclassified/- |
Location | 2988625..2989273 | Replicon | chromosome |
Accession | NZ_CP041838 | ||
Organism | Mycobacterium tuberculosis strain 2-0028P6C4 |
Toxin (Protein)
Gene name | novel[antitoxin] | Uniprot ID | P9WJ12 |
Locus tag | FPJ70_RS13920 | Protein ID | WP_003899414.1 |
Coordinates | 2988625..2988948 (-) | Length | 108 a.a. |
Antitoxin (Protein)
Gene name | novel[toxin] | Uniprot ID | P9WJ10 |
Locus tag | FPJ70_RS13925 | Protein ID | WP_003899415.1 |
Coordinates | 2989028..2989273 (-) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FPJ70_RS13890 | 2983948..2984946 | + | 999 | WP_003900538.1 | tyrosine-type recombinase/integrase | - |
FPJ70_RS13895 | 2984960..2985424 | + | 465 | WP_003900539.1 | ParB N-terminal domain-containing protein | - |
FPJ70_RS13900 | 2985412..2985663 | + | 252 | WP_003908028.1 | hypothetical protein | - |
FPJ70_RS13905 | 2985834..2987273 | - | 1440 | WP_003899411.1 | phage major capsid protein | - |
FPJ70_RS13910 | 2987281..2987814 | - | 534 | WP_003899412.1 | HK97 family phage prohead protease | - |
FPJ70_RS13915 | 2987967..2988458 | - | 492 | WP_003900541.1 | phage terminase small subunit P27 family | - |
FPJ70_RS13920 | 2988625..2988948 | - | 324 | WP_003899414.1 | type II toxin-antitoxin system toxin | Toxin |
FPJ70_RS13925 | 2989028..2989273 | - | 246 | WP_003899415.1 | type II toxin-antitoxin system antitoxin | Antitoxin |
FPJ70_RS13930 | 2989270..2990697 | - | 1428 | WP_003899416.1 | DUF3631 domain-containing protein | - |
FPJ70_RS13935 | 2990699..2991091 | - | 393 | WP_003899417.1 | DUF2742 domain-containing protein | - |
FPJ70_RS13940 | 2991088..2991348 | - | 261 | WP_003899418.1 | helix-turn-helix domain-containing protein | - |
FPJ70_RS13945 | 2991365..2991727 | - | 363 | WP_003900543.1 | hypothetical protein | - |
FPJ70_RS13950 | 2991730..2992857 | - | 1128 | WP_003899420.1 | site-specific integrase | - |
FPJ70_RS13955 | 2993002..2993229 | - | 228 | WP_003899421.1 | hypothetical protein | - |
FPJ70_RS13960 | 2993226..2993615 | - | 390 | WP_003899422.1 | hypothetical protein | - |
FPJ70_RS13965 | 2993521..2993793 | + | 273 | WP_003900544.1 | hypothetical protein | - |
FPJ70_RS13970 | 2993892..2994125 | + | 234 | WP_003413717.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Prophage | - | - | 2983948..2992857 | 8909 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 108 a.a. Molecular weight: 12359.82 Da Isoelectric Point: 8.6717
>T132322 WP_003899414.1 NZ_CP041838:c2988948-2988625 [Mycobacterium tuberculosis]
MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLD
DEQRRLEAGMKLGWHPYHFPDEPDSKQ
MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLD
DEQRRLEAGMKLGWHPYHFPDEPDSKQ
Download Length: 324 bp
>T132322 NZ_CP041838:c2988948-2988625 [Mycobacterium tuberculosis]
TTGACCCACAAGCGCACTAAACGCCAGCCAGCCATCGCCGCAGGGCTCAACGCCCCGCGTCGGAATCGCGTTGGGCGGCA
ACATGGTTGGCCGGCCGACGTTCCGTCCGCCGAGCAGCGCCGCGCCCAACGGCAGCGCGACCTCGAGGCTATCCGCCGAG
CGTACGCCGAGATGGTGGCGACATCACACGAAATCGACGACGACACAGCCGAACTGGCGCTGTTGTCGATGCATCTCGAC
GATGAGCAGCGCCGGCTTGAGGCGGGGATGAAGCTCGGCTGGCATCCGTATCACTTCCCCGACGAACCCGACAGCAAACA
GTGA
TTGACCCACAAGCGCACTAAACGCCAGCCAGCCATCGCCGCAGGGCTCAACGCCCCGCGTCGGAATCGCGTTGGGCGGCA
ACATGGTTGGCCGGCCGACGTTCCGTCCGCCGAGCAGCGCCGCGCCCAACGGCAGCGCGACCTCGAGGCTATCCGCCGAG
CGTACGCCGAGATGGTGGCGACATCACACGAAATCGACGACGACACAGCCGAACTGGCGCTGTTGTCGATGCATCTCGAC
GATGAGCAGCGCCGGCTTGAGGCGGGGATGAAGCTCGGCTGGCATCCGTATCACTTCCCCGACGAACCCGACAGCAAACA
GTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 7697.71 Da Isoelectric Point: 4.8565
>AT132322 WP_003899415.1 NZ_CP041838:c2989273-2989028 [Mycobacterium tuberculosis]
MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDP
P
MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDP
P
Download Length: 246 bp
>AT132322 NZ_CP041838:c2989273-2989028 [Mycobacterium tuberculosis]
ATGAGCGGCCACGCGTTGGCTGCTCGGACGTTGCTGGCCGCCGCGGACGAGCTTGTCGGCGGCCCGCCAGTCGAGGCTTC
GGCCGCCGCGCTGGCCGGCGACGCCGCGGGCGCATGGCGGACCGCGGCCGTCGAGCTTGCGCGAGCGTTGGTCCGCGCTG
TGGCGGAGTCGCACGGCGTCGCGGCCGTTTTGTTCGCCGCGACGGCCGCCGCGGCGGCGGCCGTCGACCGGGGTGATCCG
CCGTGA
ATGAGCGGCCACGCGTTGGCTGCTCGGACGTTGCTGGCCGCCGCGGACGAGCTTGTCGGCGGCCCGCCAGTCGAGGCTTC
GGCCGCCGCGCTGGCCGGCGACGCCGCGGGCGCATGGCGGACCGCGGCCGTCGAGCTTGCGCGAGCGTTGGTCCGCGCTG
TGGCGGAGTCGCACGGCGTCGCGGCCGTTTTGTTCGCCGCGACGGCCGCCGCGGCGGCGGCCGTCGACCGGGGTGATCCG
CCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A045IHC4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A806JR81 |