Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) unclassified/-
Location 2988625..2989273 Replicon chromosome
Accession NZ_CP041838
Organism Mycobacterium tuberculosis strain 2-0028P6C4

Toxin (Protein)


Gene name novel[antitoxin] Uniprot ID P9WJ12
Locus tag FPJ70_RS13920 Protein ID WP_003899414.1
Coordinates 2988625..2988948 (-) Length 108 a.a.

Antitoxin (Protein)


Gene name novel[toxin] Uniprot ID P9WJ10
Locus tag FPJ70_RS13925 Protein ID WP_003899415.1
Coordinates 2989028..2989273 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ70_RS13890 2983948..2984946 + 999 WP_003900538.1 tyrosine-type recombinase/integrase -
FPJ70_RS13895 2984960..2985424 + 465 WP_003900539.1 ParB N-terminal domain-containing protein -
FPJ70_RS13900 2985412..2985663 + 252 WP_003908028.1 hypothetical protein -
FPJ70_RS13905 2985834..2987273 - 1440 WP_003899411.1 phage major capsid protein -
FPJ70_RS13910 2987281..2987814 - 534 WP_003899412.1 HK97 family phage prohead protease -
FPJ70_RS13915 2987967..2988458 - 492 WP_003900541.1 phage terminase small subunit P27 family -
FPJ70_RS13920 2988625..2988948 - 324 WP_003899414.1 type II toxin-antitoxin system toxin Toxin
FPJ70_RS13925 2989028..2989273 - 246 WP_003899415.1 type II toxin-antitoxin system antitoxin Antitoxin
FPJ70_RS13930 2989270..2990697 - 1428 WP_003899416.1 DUF3631 domain-containing protein -
FPJ70_RS13935 2990699..2991091 - 393 WP_003899417.1 DUF2742 domain-containing protein -
FPJ70_RS13940 2991088..2991348 - 261 WP_003899418.1 helix-turn-helix domain-containing protein -
FPJ70_RS13945 2991365..2991727 - 363 WP_003900543.1 hypothetical protein -
FPJ70_RS13950 2991730..2992857 - 1128 WP_003899420.1 site-specific integrase -
FPJ70_RS13955 2993002..2993229 - 228 WP_003899421.1 hypothetical protein -
FPJ70_RS13960 2993226..2993615 - 390 WP_003899422.1 hypothetical protein -
FPJ70_RS13965 2993521..2993793 + 273 WP_003900544.1 hypothetical protein -
FPJ70_RS13970 2993892..2994125 + 234 WP_003413717.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - - 2983948..2992857 8909


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(91-151)

Antitoxin

Vibrio phage ICP1, Orf50

(8-86)


Sequences

Toxin        


Download         Length: 108 a.a.        Molecular weight: 12359.82 Da        Isoelectric Point: 8.6717

>T132322 WP_003899414.1 NZ_CP041838:c2988948-2988625 [Mycobacterium tuberculosis]
MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLD
DEQRRLEAGMKLGWHPYHFPDEPDSKQ

Download         Length: 324 bp

>T132322 NZ_CP041838:c2988948-2988625 [Mycobacterium tuberculosis]
TTGACCCACAAGCGCACTAAACGCCAGCCAGCCATCGCCGCAGGGCTCAACGCCCCGCGTCGGAATCGCGTTGGGCGGCA
ACATGGTTGGCCGGCCGACGTTCCGTCCGCCGAGCAGCGCCGCGCCCAACGGCAGCGCGACCTCGAGGCTATCCGCCGAG
CGTACGCCGAGATGGTGGCGACATCACACGAAATCGACGACGACACAGCCGAACTGGCGCTGTTGTCGATGCATCTCGAC
GATGAGCAGCGCCGGCTTGAGGCGGGGATGAAGCTCGGCTGGCATCCGTATCACTTCCCCGACGAACCCGACAGCAAACA
GTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 7697.71 Da        Isoelectric Point: 4.8565

>AT132322 WP_003899415.1 NZ_CP041838:c2989273-2989028 [Mycobacterium tuberculosis]
MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDP
P

Download         Length: 246 bp

>AT132322 NZ_CP041838:c2989273-2989028 [Mycobacterium tuberculosis]
ATGAGCGGCCACGCGTTGGCTGCTCGGACGTTGCTGGCCGCCGCGGACGAGCTTGTCGGCGGCCCGCCAGTCGAGGCTTC
GGCCGCCGCGCTGGCCGGCGACGCCGCGGGCGCATGGCGGACCGCGGCCGTCGAGCTTGCGCGAGCGTTGGTCCGCGCTG
TGGCGGAGTCGCACGGCGTCGCGGCCGTTTTGTTCGCCGCGACGGCCGCCGCGGCGGCGGCCGTCGACCGGGGTGATCCG
CCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A045IHC4

Antitoxin

Source ID Structure
AlphaFold DB A0A806JR81

References