Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | unclassified/- |
Location | 2969777..2970425 | Replicon | chromosome |
Accession | NZ_CP041817 | ||
Organism | Mycobacterium tuberculosis strain 4-0096P6C4 |
Toxin (Protein)
Gene name | novel[antitoxin] | Uniprot ID | P9WJ12 |
Locus tag | FPJ92_RS13865 | Protein ID | WP_003899414.1 |
Coordinates | 2969777..2970100 (-) | Length | 108 a.a. |
Antitoxin (Protein)
Gene name | novel[toxin] | Uniprot ID | P9WJ10 |
Locus tag | FPJ92_RS13870 | Protein ID | WP_003899415.1 |
Coordinates | 2970180..2970425 (-) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FPJ92_RS13835 | 2965100..2966098 | + | 999 | WP_003900538.1 | tyrosine-type recombinase/integrase | - |
FPJ92_RS13840 | 2966112..2966576 | + | 465 | WP_003900539.1 | ParB N-terminal domain-containing protein | - |
FPJ92_RS13845 | 2966564..2966815 | + | 252 | WP_003908028.1 | hypothetical protein | - |
FPJ92_RS13850 | 2966986..2968425 | - | 1440 | WP_003901443.1 | phage major capsid protein | - |
FPJ92_RS13855 | 2968433..2968966 | - | 534 | WP_003899412.1 | HK97 family phage prohead protease | - |
FPJ92_RS13860 | 2969119..2969610 | - | 492 | WP_003900541.1 | phage terminase small subunit P27 family | - |
FPJ92_RS13865 | 2969777..2970100 | - | 324 | WP_003899414.1 | type II toxin-antitoxin system toxin | Toxin |
FPJ92_RS13870 | 2970180..2970425 | - | 246 | WP_003899415.1 | type II toxin-antitoxin system antitoxin | Antitoxin |
FPJ92_RS13875 | 2970422..2971849 | - | 1428 | WP_003899416.1 | DUF3631 domain-containing protein | - |
FPJ92_RS13880 | 2971851..2972243 | - | 393 | WP_003899417.1 | DUF2742 domain-containing protein | - |
FPJ92_RS13885 | 2972240..2972500 | - | 261 | WP_003899418.1 | helix-turn-helix domain-containing protein | - |
FPJ92_RS13890 | 2972517..2972879 | - | 363 | WP_003900543.1 | hypothetical protein | - |
FPJ92_RS13895 | 2972882..2974009 | - | 1128 | WP_003899420.1 | site-specific integrase | - |
FPJ92_RS13900 | 2974154..2974381 | - | 228 | WP_003899421.1 | hypothetical protein | - |
FPJ92_RS13905 | 2974378..2974767 | - | 390 | WP_003899422.1 | hypothetical protein | - |
FPJ92_RS13910 | 2974673..2974945 | + | 273 | WP_003900544.1 | hypothetical protein | - |
FPJ92_RS13915 | 2975044..2975277 | + | 234 | WP_003413717.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
inside | Prophage | - | - | 2965100..2974009 | 8909 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 108 a.a. Molecular weight: 12359.82 Da Isoelectric Point: 8.6717
>T131050 WP_003899414.1 NZ_CP041817:c2970100-2969777 [Mycobacterium tuberculosis]
MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLD
DEQRRLEAGMKLGWHPYHFPDEPDSKQ
MTHKRTKRQPAIAAGLNAPRRNRVGRQHGWPADVPSAEQRRAQRQRDLEAIRRAYAEMVATSHEIDDDTAELALLSMHLD
DEQRRLEAGMKLGWHPYHFPDEPDSKQ
Download Length: 324 bp
>T131050 NZ_CP041817:c2970100-2969777 [Mycobacterium tuberculosis]
TTGACCCACAAGCGCACTAAACGCCAGCCAGCCATCGCCGCAGGGCTCAACGCCCCGCGTCGGAATCGCGTTGGGCGGCA
ACATGGTTGGCCGGCCGACGTTCCGTCCGCCGAGCAGCGCCGCGCCCAACGGCAGCGCGACCTCGAGGCTATCCGCCGAG
CGTACGCCGAGATGGTGGCGACATCACACGAAATCGACGACGACACAGCCGAACTGGCGCTGTTGTCGATGCATCTCGAC
GATGAGCAGCGCCGGCTTGAGGCGGGGATGAAGCTCGGCTGGCATCCGTATCACTTCCCCGACGAACCCGACAGCAAACA
GTGA
TTGACCCACAAGCGCACTAAACGCCAGCCAGCCATCGCCGCAGGGCTCAACGCCCCGCGTCGGAATCGCGTTGGGCGGCA
ACATGGTTGGCCGGCCGACGTTCCGTCCGCCGAGCAGCGCCGCGCCCAACGGCAGCGCGACCTCGAGGCTATCCGCCGAG
CGTACGCCGAGATGGTGGCGACATCACACGAAATCGACGACGACACAGCCGAACTGGCGCTGTTGTCGATGCATCTCGAC
GATGAGCAGCGCCGGCTTGAGGCGGGGATGAAGCTCGGCTGGCATCCGTATCACTTCCCCGACGAACCCGACAGCAAACA
GTGA
Antitoxin
Download Length: 82 a.a. Molecular weight: 7697.71 Da Isoelectric Point: 4.8565
>AT131050 WP_003899415.1 NZ_CP041817:c2970425-2970180 [Mycobacterium tuberculosis]
MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDP
P
MSGHALAARTLLAAADELVGGPPVEASAAALAGDAAGAWRTAAVELARALVRAVAESHGVAAVLFAATAAAAAAVDRGDP
P
Download Length: 246 bp
>AT131050 NZ_CP041817:c2970425-2970180 [Mycobacterium tuberculosis]
ATGAGCGGCCACGCGTTGGCTGCTCGGACGTTGCTGGCCGCCGCGGACGAGCTTGTCGGCGGCCCGCCAGTCGAGGCTTC
GGCCGCCGCGCTGGCCGGCGACGCCGCGGGCGCATGGCGGACCGCGGCCGTCGAGCTTGCGCGAGCGTTGGTCCGCGCTG
TGGCGGAGTCGCACGGCGTCGCGGCCGTTTTGTTCGCCGCGACGGCCGCCGCGGCGGCGGCCGTCGACCGGGGTGATCCG
CCGTGA
ATGAGCGGCCACGCGTTGGCTGCTCGGACGTTGCTGGCCGCCGCGGACGAGCTTGTCGGCGGCCCGCCAGTCGAGGCTTC
GGCCGCCGCGCTGGCCGGCGACGCCGCGGGCGCATGGCGGACCGCGGCCGTCGAGCTTGCGCGAGCGTTGGTCCGCGCTG
TGGCGGAGTCGCACGGCGTCGCGGCCGTTTTGTTCGCCGCGACGGCCGCCGCGGCGGCGGCCGTCGACCGGGGTGATCCG
CCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A045IHC4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A806JR81 |