Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 4207694..4208510 Replicon chromosome
Accession NZ_CP041362
Organism Citrobacter amalonaticus strain 133355-SW-C4-Cam

Toxin (Protein)


Gene name yhaV Uniprot ID -
Locus tag FEO47_RS20080 Protein ID WP_142765510.1
Coordinates 4207694..4208170 (-) Length 159 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID A0A3Q8DNJ3
Locus tag FEO47_RS20085 Protein ID WP_042999108.1
Coordinates 4208175..4208510 (-) Length 112 a.a.

Genomic Context

FEO47_RS20060FEO47_RS20065FEO47_RS20070FEO47_RS20075FEO47_RS20080FEO47_RS20085FEO47_RS20090FEO47_RS20095FEO47_RS20100FEO47_RS20105
Location: 4202799..4203542 (744 bp)
Type: Others
Protein ID: WP_044264050.1
Location: 4203585..4206059 (2475 bp)
Type: Others
Protein ID: WP_044257386.1
Location: 4206123..4206572 (450 bp)
Type: Others
Protein ID: WP_086513030.1
Location: 4206740..4207270 (531 bp)
Type: Others
Protein ID: WP_042999110.1
Location: 4207694..4208170 (477 bp)
Type: Toxin
Protein ID: WP_142765510.1
Location: 4208175..4208510 (336 bp)
Type: Antitoxin
Protein ID: WP_042999108.1
Location: 4208725..4209261 (537 bp)
Type: Others
Protein ID: WP_142765433.1
Location: 4209258..4209854 (597 bp)
Type: Others
Protein ID: WP_142765434.1
Location: 4209899..4210672 (774 bp)
Type: Others
Protein ID: WP_044257303.1
Location: 4210665..4211291 (627 bp)
Type: Others
Protein ID: WP_042999104.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FEO47_RS200604202799..4203542-744WP_044264050.1molecular chaperone-
FEO47_RS200654203585..4206059-2475WP_044257386.1fimbria/pilus outer membrane usher protein-
FEO47_RS200704206123..4206572-450WP_086513030.1type 1 fimbrial protein-
FEO47_RS200754206740..4207270-531WP_042999110.1type 1 fimbrial protein-
FEO47_RS200804207694..4208170-477WP_142765510.1type II toxin-antitoxin system YhaV family toxinToxin
FEO47_RS200854208175..4208510-336WP_042999108.1type II toxin-antitoxin system PrlF family antitoxinAntitoxin
FEO47_RS200904208725..4209261-537WP_142765433.1ferredoxin-type protein NapF-
FEO47_RS200954209258..4209854-597WP_142765434.1molecular chaperone-
FEO47_RS201004209899..4210672-774WP_044257303.1dimethyl sulfoxide reductase anchor subunit-
FEO47_RS201054210665..4211291-627WP_042999104.1dimethylsulfoxide reductase subunit B-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-150)

Antitoxin

PrlF antitoxin

(15-110)


Sequences

Toxin        


Download         Length: 159 a.a.        Molecular weight: 18223.81 Da        Isoelectric Point: 8.8956

>T128224 WP_142765510.1 NZ_CP041362:c4208170-4207694 [Citrobacter amalonaticus]
MDFPTWLNGWTIYAHPCFIDQYNALVARVEDLKHRFPDPIVFQKKKESKVLAHLLKSIANITHEPRASVYRPGDSIGKAY
TDWSRAKFGGGRYRLFFRYSLESKIIVIAWVNDEGPLRTYGSKTDAYKIFGKMLDEGNPPDDWLSLLQACQNDGKEHL

Download         Length: 477 bp

>T128224 NZ_CP041362:c4208170-4207694 [Citrobacter amalonaticus]
ATGGATTTTCCCACATGGCTGAACGGGTGGACGATCTACGCTCATCCCTGTTTTATCGATCAATACAACGCGCTGGTCGC
ACGTGTTGAAGACCTTAAGCACAGGTTTCCAGATCCCATTGTTTTCCAGAAGAAGAAAGAGAGCAAGGTGCTGGCGCATT
TATTGAAATCCATTGCCAACATTACCCACGAACCCCGAGCTTCTGTTTACCGGCCTGGTGACAGTATAGGGAAAGCTTAT
ACAGACTGGTCGAGAGCGAAGTTTGGTGGAGGACGGTATCGCTTATTTTTCCGTTATAGTCTCGAGAGTAAGATCATTGT
CATCGCATGGGTGAATGATGAAGGGCCATTGCGCACCTACGGCAGCAAGACCGATGCCTATAAGATTTTCGGGAAAATGC
TCGATGAGGGGAATCCACCCGACGACTGGCTAAGTTTGCTTCAGGCTTGTCAAAACGACGGGAAGGAACATCTTTGA

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12505.83 Da        Isoelectric Point: 4.1876

>AT128224 WP_042999108.1 NZ_CP041362:c4208510-4208175 [Citrobacter amalonaticus]
MFAYVRSEDIAIEADSKLTERHQTTIPASIRDALHLRSGDRIHYTLLSTGEVLLSKYSEATEDGVMRSFLDFLSQDVANN
PQTLKKLDLSRGYELVDGIDVNLDDEISDED

Download         Length: 336 bp

>AT128224 NZ_CP041362:c4208510-4208175 [Citrobacter amalonaticus]
ATGTTCGCCTATGTTCGATCTGAAGACATTGCCATTGAAGCGGATTCTAAATTGACGGAACGACATCAAACGACTATCCC
TGCGTCGATCAGGGACGCTTTACATCTTCGCAGTGGTGATCGTATTCATTACACATTGCTTTCCACGGGTGAAGTACTGC
TTTCAAAATACAGTGAAGCAACGGAGGACGGTGTGATGCGATCATTCCTGGACTTCTTATCACAGGATGTGGCGAATAAC
CCACAAACGCTGAAGAAGCTGGATTTATCCCGTGGCTATGAACTGGTTGATGGTATCGACGTCAATCTTGATGATGAAAT
CAGCGACGAAGACTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A3Q8DNJ3

References