127343

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2063347..2063864 Replicon chromosome
Accession NZ_CP040998
Organism Staphylococcus aureus strain FDAARGOS_773

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag FIU14_RS10260 Protein ID WP_000113262.1
Coordinates 2063598..2063864 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag FIU14_RS10255 Protein ID WP_000584499.1
Coordinates 2063347..2063598 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FIU14_RS10225 2059045..2059764 + 720 WP_000479576.1 amino acid ABC transporter permease -
FIU14_RS10230 2059761..2060492 + 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
FIU14_RS10235 2060589..2061839 - 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
FIU14_RS10240 2062094..2062456 + 363 WP_000819843.1 DUF4467 domain-containing protein -
FIU14_RS10245 2062475..2063074 + 600 WP_000162813.1 DsbA family protein -
FIU14_RS10250 2063081..2063182 + 102 WP_001791744.1 hypothetical protein -
FIU14_RS10255 2063347..2063598 + 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
FIU14_RS10260 2063598..2063864 + 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
FIU14_RS10265 2063899..2063970 + 72 Protein_1978 hypothetical protein -
FIU14_RS10270 2064159..2065709 + 1551 WP_000727762.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
FIU14_RS10275 2065895..2066362 + 468 WP_000153344.1 SRPBCC domain-containing protein -
FIU14_RS10280 2066446..2066628 + 183 WP_000230294.1 hypothetical protein -
FIU14_RS10285 2066845..2067669 + 825 WP_000572040.1 formate/nitrite transporter family protein -
FIU14_RS10290 2067902..2068438 + 537 WP_000169317.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T127343 WP_000113262.1 NZ_CP040998:2063598-2063864 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T127343 NZ_CP040998:2063598-2063864 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT127343 WP_000584499.1 NZ_CP040998:2063347-2063598 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT127343 NZ_CP040998:2063347-2063598 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
AlphaFold DB T1YB60

References