Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type I Classification (family/domain) symER/SymE(toxin)
Location 3595886..3596298 Replicon chromosome
Accession NZ_CP040667
Organism Escherichia coli strain S17-1

Toxin (Protein)


Gene name symE Uniprot ID U9YSY7
Locus tag FGH86_RS17705 Protein ID WP_000132601.1
Coordinates 3595957..3596298 (+) Length 114 a.a.

Antitoxin (RNA)


Gene name symR
Locus tag -
Coordinates 3595886..3595962 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FGH86_RS17695 3592749..3594338 + 1590 WP_001063204.1 type I restriction-modification system methyltransferase -
FGH86_RS17700 3594335..3595729 + 1395 WP_001272447.1 type I restriction-modification system specificity subunit -
- 3595886..3595962 - 77 NuclAT_14 - Antitoxin
- 3595886..3595962 - 77 NuclAT_14 - Antitoxin
- 3595886..3595962 - 77 NuclAT_14 - Antitoxin
- 3595886..3595962 - 77 NuclAT_14 - Antitoxin
- 3595886..3595962 - 77 NuclAT_15 - Antitoxin
- 3595886..3595962 - 77 NuclAT_15 - Antitoxin
- 3595886..3595962 - 77 NuclAT_15 - Antitoxin
- 3595886..3595962 - 77 NuclAT_15 - Antitoxin
FGH86_RS17705 3595957..3596298 + 342 WP_000132601.1 endoribonuclease SymE Toxin
FGH86_RS17710 3596460..3597839 + 1380 WP_000443951.1 5-methylcytosine-specific restriction endonuclease subunit McrB -
FGH86_RS17715 3597839..3598885 + 1047 WP_000437621.1 5-methylcytosine-specific restriction endonuclease system specificity protein McrC -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(20-71)


Sequences


Toxin        


Download         Length: 114 a.a.        Molecular weight: 12203.02 Da        Isoelectric Point: 8.5012

>T126460 WP_000132601.1 NZ_CP040667:3595957-3596298 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAEESE
LMQSLRQVCKLSARKQKQVQAFIGVIAGKQKVA

Download         Length: 342 bp

>T126460 NZ_CP040667:3595957-3596298 [Escherichia coli]
ATGACTGACACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCATGTCACCGTCGGTTA
TGCGAGTCGCTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CTGGCACGGCGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGAGGAGAGCGAA
CTGATGCAGTCGCTACGCCAGGTGTGCAAACTGTCGGCGCGTAAACAAAAGCAGGTGCAGGCGTTTATTGGAGTGATTGC
CGGTAAACAGAAAGTCGCGTAA

Antitoxin


Download         Length: 77 bp

>AT126460 NZ_CP040667:c3595962-3595886 [Escherichia coli]
AGTCATAACTGCTATTCTCCAGGAATAGTGATTGTGATTAGCGATGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB U9YSY7


Antitoxin

Download structure file

References