Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2631439..2631962 Replicon chromosome
Accession NZ_CP040622
Organism Staphylococcus aureus strain JKD6004

Toxin (Protein)


Gene name yoeB Uniprot ID X5DYX7
Locus tag FF958_RS13585 Protein ID WP_000074048.1
Coordinates 2631439..2631705 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag FF958_RS13590 Protein ID WP_000587616.1
Coordinates 2631705..2631962 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FF958_RS13565 2626746..2627933 - 1188 WP_000026194.1 MFS transporter -
FF958_RS13570 2628329..2629105 - 777 WP_000072147.1 iron export ABC transporter permease subunit FetB -
FF958_RS13575 2629098..2629760 - 663 WP_000923520.1 ATP-binding cassette domain-containing protein -
FF958_RS13580 2630008..2631084 - 1077 WP_001076671.1 M42 family metallopeptidase -
FF958_RS13585 2631439..2631705 - 267 WP_000074048.1 Txe/YoeB family addiction module toxin Toxin
FF958_RS13590 2631705..2631962 - 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
FF958_RS13600 2632321..2632776 + 456 WP_000732082.1 DUF1307 domain-containing protein -
FF958_RS13605 2632944..2634521 - 1578 WP_000143503.1 FMN-binding glutamate synthase family protein -
FF958_RS13610 2634716..2635465 + 750 WP_000072442.1 hypothetical protein -
FF958_RS13615 2635689..2636882 - 1194 WP_000675401.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10648.23 Da        Isoelectric Point: 10.1384

>T126190 WP_000074048.1 NZ_CP040622:c2631705-2631439 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T126190 NZ_CP040622:c2631705-2631439 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCTTTTGAAAAATTAGAGCCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTAATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT126190 WP_000587616.1 NZ_CP040622:c2631962-2631705 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT126190 NZ_CP040622:c2631962-2631705 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAATAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7V6W
PDB 7V5Y
PDB 7V5Z

Antitoxin

Source ID Structure
PDB 7V6W
PDB 7V5Z
PDB 7V5Y
AlphaFold DB W8TQT5

References