Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symER/SymE(toxin)
Location 4735699..4736111 Replicon chromosome
Accession NZ_CP040572
Organism Escherichia coli O157:H7 strain ECP17-46

Toxin (Protein)


Gene name symE Uniprot ID Q8FA88
Locus tag FGA21_RS24325 Protein ID WP_000132630.1
Coordinates 4735770..4736111 (+) Length 114 a.a.

Antitoxin (RNA)


Gene name symR
Locus tag -
Coordinates 4735699..4735775 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FGA21_RS24315 4732326..4733795 + 1470 WP_001302468.1 type I restriction-modification system subunit M -
FGA21_RS24320 4733795..4735549 + 1755 WP_000110082.1 restriction endonuclease subunit S -
- 4735699..4735775 - 77 NuclAT_14 - Antitoxin
- 4735699..4735775 - 77 NuclAT_14 - Antitoxin
- 4735699..4735775 - 77 NuclAT_14 - Antitoxin
- 4735699..4735775 - 77 NuclAT_14 - Antitoxin
- 4735699..4735775 - 77 NuclAT_15 - Antitoxin
- 4735699..4735775 - 77 NuclAT_15 - Antitoxin
- 4735699..4735775 - 77 NuclAT_15 - Antitoxin
- 4735699..4735775 - 77 NuclAT_15 - Antitoxin
FGA21_RS24325 4735770..4736111 + 342 WP_000132630.1 endoribonuclease SymE Toxin
FGA21_RS24330 4736158..4737321 - 1164 WP_001304006.1 DUF1524 domain-containing protein -
FGA21_RS24335 4737369..4738250 - 882 WP_001304007.1 DUF262 domain-containing protein -
FGA21_RS24340 4738347..4738511 - 165 WP_000394274.1 DUF1127 domain-containing protein -
FGA21_RS24345 4738688..4740100 + 1413 WP_000199295.1 PLP-dependent aminotransferase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - espX6 4727898..4749094 21196


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12294.13 Da        Isoelectric Point: 8.4982

>T126100 WP_000132630.1 NZ_CP040572:4735770-4736111 [Escherichia coli O157:H7]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Download         Length: 342 bp

>T126100 NZ_CP040572:4735770-4736111 [Escherichia coli O157:H7]
ATGACTGATACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGTTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGTGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTTGCCTGA

Antitoxin


Download         Length: 77 bp

>AT126100 NZ_CP040572:c4735775-4735699 [Escherichia coli O157:H7]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y5T0

Antitoxin

Download structure file

References