Detailed information of TA system TA124980

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yafN-yafO (relBE)/YafO-YafN
• Location: 4478595..4479289
• Replicon: chromosome
• Accession: NZ_CP040107
• Organism: Escherichia coli O157:H7 strain MB9-1

Toxin (Protein)

• Gene name: yafO
• Uniprot ID: C3TNX7
• Locus tag: FDZ86_RS22655
• Protein ID: WP_001263495.1
• Coordinates: 4478595..4478993 (-)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: yafN
• Uniprot ID: S1FJN6
• Locus tag: FDZ86_RS22660
• Protein ID: WP_000554757.1
• Coordinates: 4478996..4479289 (-)
• Length: 98 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
-	4474182..4474262	-	81	NuclAT_12	-	-
-	4474182..4474262	-	81	NuclAT_12	-	-
-	4474182..4474262	-	81	NuclAT_12	-	-
-	4474182..4474262	-	81	NuclAT_12	-	-
FDZ86_RS22630	4474858..4475316	-	459	WP_001291990.1	xanthine phosphoribosyltransferase	-
FDZ86_RS22635	4475577..4477034	+	1458	WP_001293009.1	cytosol nonspecific dipeptidase	-
FDZ86_RS22640	4477091..4477648	-	558	WP_023438539.1	peptide chain release factor H	-
FDZ86_RS22645	4477560..4477826	-	267	WP_001303804.1	hypothetical protein	-
FDZ86_RS22650	4478133..4478585	-	453	WP_001059871.1	GNAT family N-acetyltransferase	-
FDZ86_RS22655	4478595..4478993	-	399	WP_001263495.1	type II toxin-antitoxin system mRNA interferase toxin YafO	Toxin
FDZ86_RS22660	4478996..4479289	-	294	WP_000554757.1	type I toxin-antitoxin system antitoxin YafN	Antitoxin
FDZ86_RS22665	4479341..4480396	-	1056	WP_001226186.1	DNA polymerase IV	-
FDZ86_RS22670	4480467..4481252	-	786	WP_000207556.1	putative lateral flagellar export/assembly protein LafU	-
FDZ86_RS22675	4481197..4482936	+	1740	WP_001301901.1	flagellar biosynthesis protein FlhA	-
FDZ86_RS22680	4483081..4483578	-	498	Protein_4439	REP-associated tyrosine transposase RayT	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	-	-	4412806..4484527	71721

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase toxin YafO (27-130)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 15473.86 Da
• Isoelectric Point: 8.0949

>T124980 WP_001263495.1 NZ_CP040107:c4478993-4478595 [Escherichia coli O157:H7]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANVNNPFPPQLRQFSRT
NDESHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Nucleotide

• Length: 399 bp

>T124980 NZ_CP040107:c4478993-4478595 [Escherichia coli O157:H7]
ATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAGCTTGATGCGTTAACGGCGGATTTTATTTC
CTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACGACTCGTTTACTTGGCCATTAATCA
AATTTGAGCGAGTTGCTCATATTCATCTGGCAAATGTGAATAATCCATTTCCGCCACAGTTGCGCCAATTCAGCAGAACG
AATGACGAATCGCATTTGGTATATTGTCAGGGTGCGTTTGATGAGCAAGCATGGTTGCTCATTGCCATTCTGAAACCTGA
ACCTCATAAACTGGCTCGAGATAACAACCAAATGCATAAAATTGGGAAAATGGCAGAAGCGTTTCGCATGCGTTTTTGA

Antitoxin

Protein

• Length: 98 a.a.
• Molecular weight: 11233.81 Da
• Isoelectric Point: 5.9050

>AT124980 WP_000554757.1 NZ_CP040107:c4479289-4478996 [Escherichia coli O157:H7]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EKYLNDMTDDDFNDFKE

Nucleotide

• Length: 294 bp

>AT124980 NZ_CP040107:c4479289-4478996 [Escherichia coli O157:H7]
ATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAATTACGTAAAAACCCAGCTAAATACTTTATTGATCAACC
GGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTG
CTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGAGCT
GAAAAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAA

Structures

Antitoxin

• AlphaFold DB: S1FJN6