Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 743046..743773 Replicon chromosome
Accession NZ_CP039837
Organism Escherichia coli O157:H7 strain USDA5905

Toxin (Protein)


Gene name higB Uniprot ID U9ZMR4
Locus tag E3175_RS03640 Protein ID WP_000550189.1
Coordinates 743046..743360 (+) Length 105 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag E3175_RS03645 Protein ID WP_000560248.1
Coordinates 743357..743773 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E3175_RS03620 739204..740190 - 987 WP_000617675.1 Gfo/Idh/MocA family oxidoreductase -
E3175_RS03625 740269..740961 - 693 WP_000942545.1 vancomycin high temperature exclusion protein -
E3175_RS03630 741038..741541 - 504 WP_001295542.1 M48 family metallopeptidase -
E3175_RS03635 741626..742762 + 1137 WP_000018712.1 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG -
E3175_RS03640 743046..743360 + 315 WP_000550189.1 type II toxin-antitoxin system toxin HigB Toxin
E3175_RS03645 743357..743773 + 417 WP_000560248.1 type II toxin-antitoxin system antitoxin HigA Antitoxin
E3175_RS03650 743818..745836 - 2019 WP_000121479.1 NADPH-dependent 2,4-dienoyl-CoA reductase -
E3175_RS03655 746362..748713 - 2352 WP_000695518.1 alpha-glucosidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, mRNA interferase HigB

(20-92)

Antitoxin

Antitoxin HigA

(1-138)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 12103.10 Da        Isoelectric Point: 10.0409

>T124340 WP_000550189.1 NZ_CP039837:743046-743360 [Escherichia coli O157:H7]
MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAVFPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKC
YIREVMTHKEYDFFTAVHRTKGKK

Download         Length: 315 bp

>T124340 NZ_CP039837:743046-743360 [Escherichia coli O157:H7]
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTAGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTTTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15046.57 Da        Isoelectric Point: 4.5805

>AT124340 WP_000560248.1 NZ_CP039837:743357-743773 [Escherichia coli O157:H7]
MIAIADILHAGEKLTAVAPFLAGIQNEEQYIQALELVDHLLLNDPENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGG
IAVIRTLMDQYGLTLSDLPEIGSKSMVSRVLSGKRKLTLEHAKKLAMRFGISPALFID

Download         Length: 417 bp

>AT124340 NZ_CP039837:743357-743773 [Escherichia coli O157:H7]
ATGATTGCGATTGCCGACATCTTGCATGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACATCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTACTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAATGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6KMQ
PDB 5IFG
PDB 5YCL
PDB 6KML

Antitoxin

Source ID Structure

References