Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/YoeB-RelB |
Location | 800228..800741 | Replicon | chromosome |
Accession | NZ_CP039648 | ||
Organism | Azospirillum sp. TSA2s |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | - |
Locus tag | E6C67_RS17790 | Protein ID | WP_109156664.1 |
Coordinates | 800228..800494 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | E6C67_RS17795 | Protein ID | WP_109156677.1 |
Coordinates | 800475..800741 (-) | Length | 89 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
E6C67_RS17765 | 795979..796890 | + | 912 | WP_136703498.1 | GntR family transcriptional regulator | - |
E6C67_RS17770 | 796939..797787 | + | 849 | WP_211103546.1 | transporter substrate-binding domain-containing protein | - |
E6C67_RS17775 | 797988..798635 | + | 648 | WP_109156661.1 | amino acid ABC transporter permease | - |
E6C67_RS17780 | 798640..799344 | + | 705 | WP_109156662.1 | amino acid ABC transporter permease | - |
E6C67_RS17785 | 799407..800171 | + | 765 | WP_169054953.1 | amino acid ABC transporter ATP-binding protein | - |
E6C67_RS17790 | 800228..800494 | - | 267 | WP_109156664.1 | Txe/YoeB family addiction module toxin | Toxin |
E6C67_RS17795 | 800475..800741 | - | 267 | WP_109156677.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
E6C67_RS17800 | 800949..801623 | + | 675 | WP_136703500.1 | ATP-binding cassette domain-containing protein | - |
E6C67_RS17805 | 801623..802258 | + | 636 | WP_136703501.1 | energy-coupling factor transporter transmembrane protein EcfT | - |
E6C67_RS17810 | 802286..802834 | + | 549 | WP_136703502.1 | biotin transporter BioY | - |
E6C67_RS17815 | 802860..804326 | + | 1467 | WP_136703586.1 | AMP-binding protein | - |
E6C67_RS17820 | 804323..805492 | + | 1170 | WP_136703503.1 | thiolase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10338.76 Da Isoelectric Point: 9.4084
>T124187 WP_109156664.1 NZ_CP039648:c800494-800228 [Azospirillum sp. TSA2s]
MKKVWTDGAWEDYLYWQKNDRAVLKKVNDLIRDTERNPFSGLGKPEPLKEGLAGWWSRRITGEHRLVYRLTGSGDAQALE
ILACRYHY
MKKVWTDGAWEDYLYWQKNDRAVLKKVNDLIRDTERNPFSGLGKPEPLKEGLAGWWSRRITGEHRLVYRLTGSGDAQALE
ILACRYHY
Download Length: 267 bp
>T124187 NZ_CP039648:c800494-800228 [Azospirillum sp. TSA2s]
ATGAAGAAGGTTTGGACTGACGGCGCTTGGGAGGATTACTTATACTGGCAGAAGAACGACAGGGCCGTGTTGAAGAAGGT
CAACGACCTCATTCGCGATACGGAACGGAACCCGTTTTCAGGGCTGGGCAAACCTGAACCGTTGAAGGAAGGGCTTGCAG
GCTGGTGGTCGCGCCGGATCACGGGCGAACATCGGTTGGTCTATCGGTTGACCGGAAGCGGCGACGCCCAGGCACTCGAA
ATCCTGGCCTGCCGGTATCATTACTGA
ATGAAGAAGGTTTGGACTGACGGCGCTTGGGAGGATTACTTATACTGGCAGAAGAACGACAGGGCCGTGTTGAAGAAGGT
CAACGACCTCATTCGCGATACGGAACGGAACCCGTTTTCAGGGCTGGGCAAACCTGAACCGTTGAAGGAAGGGCTTGCAG
GCTGGTGGTCGCGCCGGATCACGGGCGAACATCGGTTGGTCTATCGGTTGACCGGAAGCGGCGACGCCCAGGCACTCGAA
ATCCTGGCCTGCCGGTATCATTACTGA
Antitoxin
Download Length: 89 a.a. Molecular weight: 9853.21 Da Isoelectric Point: 4.6768
>AT124187 WP_109156677.1 NZ_CP039648:c800741-800475 [Azospirillum sp. TSA2s]
MGHINYTDLRNNLASVMDEVCDSRAPLTVTRQKGRSVVMISEEEFEGLMETLHLLKSPRNAERLLKGIAQLDAGKGIERD
ILNEEGLD
MGHINYTDLRNNLASVMDEVCDSRAPLTVTRQKGRSVVMISEEEFEGLMETLHLLKSPRNAERLLKGIAQLDAGKGIERD
ILNEEGLD
Download Length: 267 bp
>AT124187 NZ_CP039648:c800741-800475 [Azospirillum sp. TSA2s]
ATGGGTCACATCAACTACACAGATCTCAGAAACAATCTTGCCAGCGTGATGGACGAGGTCTGTGACAGCCGCGCGCCGTT
AACCGTTACCCGTCAGAAGGGGCGGTCGGTGGTGATGATTTCCGAGGAAGAGTTCGAAGGGCTGATGGAGACGCTTCATC
TCCTGAAAAGCCCCAGGAACGCGGAGCGGCTGCTCAAGGGCATCGCCCAACTTGATGCTGGCAAAGGCATCGAGCGGGAC
ATTCTGAATGAAGAAGGTTTGGACTGA
ATGGGTCACATCAACTACACAGATCTCAGAAACAATCTTGCCAGCGTGATGGACGAGGTCTGTGACAGCCGCGCGCCGTT
AACCGTTACCCGTCAGAAGGGGCGGTCGGTGGTGATGATTTCCGAGGAAGAGTTCGAAGGGCTGATGGAGACGCTTCATC
TCCTGAAAAGCCCCAGGAACGCGGAGCGGCTGCTCAAGGGCATCGCCCAACTTGATGCTGGCAAAGGCATCGAGCGGGAC
ATTCTGAATGAAGAAGGTTTGGACTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|
Antitoxin
Source | ID | Structure |
---|