Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 800228..800741 Replicon chromosome
Accession NZ_CP039648
Organism Azospirillum sp. TSA2s

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag E6C67_RS17790 Protein ID WP_109156664.1
Coordinates 800228..800494 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag E6C67_RS17795 Protein ID WP_109156677.1
Coordinates 800475..800741 (-) Length 89 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E6C67_RS17765 795979..796890 + 912 WP_136703498.1 GntR family transcriptional regulator -
E6C67_RS17770 796939..797787 + 849 WP_211103546.1 transporter substrate-binding domain-containing protein -
E6C67_RS17775 797988..798635 + 648 WP_109156661.1 amino acid ABC transporter permease -
E6C67_RS17780 798640..799344 + 705 WP_109156662.1 amino acid ABC transporter permease -
E6C67_RS17785 799407..800171 + 765 WP_169054953.1 amino acid ABC transporter ATP-binding protein -
E6C67_RS17790 800228..800494 - 267 WP_109156664.1 Txe/YoeB family addiction module toxin Toxin
E6C67_RS17795 800475..800741 - 267 WP_109156677.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
E6C67_RS17800 800949..801623 + 675 WP_136703500.1 ATP-binding cassette domain-containing protein -
E6C67_RS17805 801623..802258 + 636 WP_136703501.1 energy-coupling factor transporter transmembrane protein EcfT -
E6C67_RS17810 802286..802834 + 549 WP_136703502.1 biotin transporter BioY -
E6C67_RS17815 802860..804326 + 1467 WP_136703586.1 AMP-binding protein -
E6C67_RS17820 804323..805492 + 1170 WP_136703503.1 thiolase family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(1-88)

Antitoxin

(1-73)


Sequences


Toxin        


Download         Length: 89 a.a.        Molecular weight: 10338.76 Da        Isoelectric Point: 9.4084

>T124187 WP_109156664.1 NZ_CP039648:c800494-800228 [Azospirillum sp. TSA2s]
MKKVWTDGAWEDYLYWQKNDRAVLKKVNDLIRDTERNPFSGLGKPEPLKEGLAGWWSRRITGEHRLVYRLTGSGDAQALE
ILACRYHY

Download         Length: 267 bp

>T124187 NZ_CP039648:c800494-800228 [Azospirillum sp. TSA2s]
ATGAAGAAGGTTTGGACTGACGGCGCTTGGGAGGATTACTTATACTGGCAGAAGAACGACAGGGCCGTGTTGAAGAAGGT
CAACGACCTCATTCGCGATACGGAACGGAACCCGTTTTCAGGGCTGGGCAAACCTGAACCGTTGAAGGAAGGGCTTGCAG
GCTGGTGGTCGCGCCGGATCACGGGCGAACATCGGTTGGTCTATCGGTTGACCGGAAGCGGCGACGCCCAGGCACTCGAA
ATCCTGGCCTGCCGGTATCATTACTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9853.21 Da        Isoelectric Point: 4.6768

>AT124187 WP_109156677.1 NZ_CP039648:c800741-800475 [Azospirillum sp. TSA2s]
MGHINYTDLRNNLASVMDEVCDSRAPLTVTRQKGRSVVMISEEEFEGLMETLHLLKSPRNAERLLKGIAQLDAGKGIERD
ILNEEGLD

Download         Length: 267 bp

>AT124187 NZ_CP039648:c800741-800475 [Azospirillum sp. TSA2s]
ATGGGTCACATCAACTACACAGATCTCAGAAACAATCTTGCCAGCGTGATGGACGAGGTCTGTGACAGCCGCGCGCCGTT
AACCGTTACCCGTCAGAAGGGGCGGTCGGTGGTGATGATTTCCGAGGAAGAGTTCGAAGGGCTGATGGAGACGCTTCATC
TCCTGAAAAGCCCCAGGAACGCGGAGCGGCTGCTCAAGGGCATCGCCCAACTTGATGCTGGCAAAGGCATCGAGCGGGAC
ATTCTGAATGAAGAAGGTTTGGACTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References