Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2428053..2428570 Replicon chromosome
Accession NZ_CP038819
Organism Staphylococcus aureus strain O82

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag SaO82_RS12350 Protein ID WP_000113259.1
Coordinates 2428053..2428319 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag SaO82_RS12355 Protein ID WP_000584500.1
Coordinates 2428319..2428570 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SaO82_RS12325 2423223..2423759 - 537 WP_000185899.1 GNAT family N-acetyltransferase -
SaO82_RS12330 2424259..2425083 - 825 WP_000594633.1 formate/nitrite transporter family protein -
SaO82_RS12335 2425286..2425468 - 183 WP_000079140.1 hypothetical protein -
SaO82_RS12340 2425555..2426022 - 468 WP_000153340.1 SRPBCC domain-containing protein -
SaO82_RS12345 2426208..2427758 - 1551 WP_000727763.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
SaO82_RS12350 2428053..2428319 - 267 WP_000113259.1 Txe/YoeB family addiction module toxin Toxin
SaO82_RS12355 2428319..2428570 - 252 WP_000584500.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
SaO82_RS12360 2428734..2428832 - 99 Protein_2312 hypothetical protein -
SaO82_RS12365 2428842..2429441 - 600 WP_000162810.1 DsbA family protein -
SaO82_RS12370 2429460..2429822 - 363 WP_000819848.1 DUF4467 domain-containing protein -
SaO82_RS12375 2430077..2431327 + 1251 WP_001012232.1 FemA/FemB family glycyltransferase FmhA -
SaO82_RS12380 2431424..2432155 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
SaO82_RS12385 2432152..2432871 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(8-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10464.08 Da        Isoelectric Point: 10.2538

>T123223 WP_000113259.1 NZ_CP038819:c2428319-2428053 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELIKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYKVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T123223 NZ_CP038819:c2428319-2428053 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTAATTAAAAGTATTGACAGAAATGGTGCATTGAAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATAAAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9419.58 Da        Isoelectric Point: 4.3407

>AT123223 WP_000584500.1 NZ_CP038819:c2428570-2428319 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTVTKD
IDV

Download         Length: 252 bp

>AT123223 NZ_CP038819:c2428570-2428319 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACCTCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTGTAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References