Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) prlF-yhaV (relBE)/YhaV-PrlF
Location 44590..45443 Replicon chromosome
Accession NZ_CP038498
Organism Pectobacterium punjabense strain SS95

Toxin (Protein)


Gene name yhaV Uniprot ID -
Locus tag E2566_RS00205 Protein ID WP_107168606.1
Coordinates 44955..45443 (+) Length 163 a.a.

Antitoxin (Protein)


Gene name prlF Uniprot ID -
Locus tag E2566_RS00200 Protein ID WP_107168605.1
Coordinates 44590..44931 (+) Length 114 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E2566_RS00185 40085..41497 + 1413 WP_107168602.1 anion permease -
E2566_RS00190 41691..43319 + 1629 WP_107168603.1 sensor histidine kinase -
E2566_RS00195 43312..44034 + 723 WP_107168604.1 two-component system response regulator DcuR -
E2566_RS00200 44590..44931 + 342 WP_107168605.1 type II toxin-antitoxin system PrlF family antitoxin Antitoxin
E2566_RS00205 44955..45443 + 489 WP_107168606.1 type II toxin-antitoxin system YhaV family toxin Toxin
E2566_RS00210 45576..46919 - 1344 WP_107168607.1 2-hydroxycarboxylate transporter family protein -
E2566_RS00215 47526..48209 - 684 WP_107168608.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin endonuclease, YhaV

(12-148)

Antitoxin

PrlF antitoxin

(15-113)


Sequences

Toxin        


Download         Length: 163 a.a.        Molecular weight: 18544.34 Da        Isoelectric Point: 7.7664

>T122985 WP_107168606.1 NZ_CP038498:44955-45443 [Pectobacterium punjabense]
MEYLEVNGWRICFHLCFLQQIAELAQKVAELKAAKPGEYLGKKETKLLRAIERVIEEWIAVDPLNAQYRQGDTLGDEFKH
WFRAKFLSQFRLFYRCSAEHKTIIIGWVNDFDTLRAYGSKTDAYKVFAGMLKAGDPPDDWEKLLSEAKAATATTSISGFL
GK

Download         Length: 489 bp

>T122985 NZ_CP038498:44955-45443 [Pectobacterium punjabense]
ATGGAGTATTTAGAAGTAAATGGCTGGAGAATCTGCTTTCACTTATGCTTTTTGCAGCAGATTGCAGAACTTGCTCAAAA
GGTTGCTGAATTAAAGGCTGCAAAGCCCGGTGAATACCTTGGCAAGAAAGAAACAAAGCTCCTACGTGCGATTGAGCGAG
TGATTGAGGAATGGATAGCCGTCGATCCTCTCAACGCGCAATACCGTCAGGGAGACACGTTAGGCGATGAATTCAAACAT
TGGTTCCGCGCAAAGTTCTTGTCGCAGTTCCGTTTGTTCTATCGTTGCAGCGCAGAGCATAAGACTATCATTATCGGTTG
GGTAAATGATTTTGATACGCTTCGTGCTTACGGTTCAAAGACAGATGCCTATAAGGTGTTCGCAGGGATGTTAAAAGCAG
GCGACCCACCAGATGACTGGGAGAAACTTCTCAGTGAGGCAAAAGCCGCTACCGCCACAACTTCTATTTCAGGTTTCCTT
GGAAAATAG

Antitoxin


Download         Length: 114 a.a.        Molecular weight: 12577.28 Da        Isoelectric Point: 4.4335

>AT122985 WP_107168605.1 NZ_CP038498:44590-44931 [Pectobacterium punjabense]
MAIQINTADVSLRAESRLTERSQTTIPAAIRDALHLKPGEYIKYTLLAGGKVIMSRQEEEQDDPVVSQFLTFLENDMKKN
PQNIHPVPVAFWESIKALTAGVEVDLDAPLTDD

Download         Length: 342 bp

>AT122985 NZ_CP038498:44590-44931 [Pectobacterium punjabense]
ATGGCTATTCAAATTAATACGGCAGATGTGTCACTGCGCGCTGAGTCTCGACTCACCGAACGCAGCCAGACAACGATTCC
GGCAGCAATACGCGATGCTTTGCATCTCAAGCCAGGTGAGTACATTAAGTACACCTTGCTTGCAGGTGGCAAAGTCATCA
TGTCTCGACAGGAAGAAGAACAGGACGACCCCGTTGTATCGCAGTTTCTGACTTTTCTCGAAAACGACATGAAGAAAAAC
CCACAAAACATTCACCCCGTACCTGTGGCGTTCTGGGAAAGCATCAAAGCATTAACTGCTGGAGTTGAGGTCGATCTAGA
CGCGCCGCTTACTGATGACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References