Detailed information of TA system TA122950

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): ldrD-agrB/Ldr(toxin)
• Location: 5058916..5059137
• Replicon: chromosome
• Accession: NZ_CP038494
• Organism: Escherichia coli O157:H7 strain TT12B

Toxin (Protein)

• Gene name: ldrD
• Uniprot ID: S1NWX0
• Locus tag: E5F07_RS24705
• Protein ID: WP_001295224.1
• Coordinates: 5058916..5059023 (-)
• Length: 36 a.a.

Antitoxin (RNA)

Gene name	agrB
Locus tag	-
Coordinates	5059072..5059137 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
E5F07_RS24680	5054169..5054921	-	753	Protein_4801	cellulose biosynthesis protein BcsQ	-
E5F07_RS24685	5054933..5055121	-	189	WP_001063316.1	YhjR family protein	-
E5F07_RS24690	5055394..5056965	+	1572	WP_001204920.1	cellulose biosynthesis protein BcsE	-
E5F07_RS24695	5056962..5057153	+	192	WP_000988308.1	cellulose biosynthesis protein BcsF	-
E5F07_RS24700	5057150..5058829	+	1680	WP_000191596.1	cellulose biosynthesis protein BcsG	-
E5F07_RS24705	5058916..5059023	-	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	Toxin
-	5059072..5059137	+	66	NuclAT_17	-	Antitoxin
-	5059072..5059137	+	66	NuclAT_17	-	Antitoxin
-	5059072..5059137	+	66	NuclAT_17	-	Antitoxin
-	5059072..5059137	+	66	NuclAT_17	-	Antitoxin
-	5059072..5059137	+	66	NuclAT_22	-	Antitoxin
-	5059072..5059137	+	66	NuclAT_22	-	Antitoxin
-	5059072..5059137	+	66	NuclAT_22	-	Antitoxin
-	5059072..5059137	+	66	NuclAT_22	-	Antitoxin
E5F07_RS24710	5059499..5060770	+	1272	WP_001301684.1	amino acid permease	-
E5F07_RS24715	5060800..5061804	-	1005	WP_000107027.1	dipeptide ABC transporter ATP-binding subunit DppF	-
E5F07_RS24720	5061801..5062784	-	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	-
E5F07_RS24725	5062795..5063697	-	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Type I toxin-antitoxin system, toxin Ldr (1-35)

Sequences

Toxin

Protein

• Length: 36 a.a.
• Molecular weight: 3882.70 Da
• Isoelectric Point: 9.0157

>T122950 WP_001295224.1 NZ_CP038494:c5059023-5058916 [Escherichia coli O157:H7]
MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Nucleotide

• Length: 108 bp

>T122950 NZ_CP038494:c5059023-5058916 [Escherichia coli O157:H7]
ATGACGCTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin

Nucleotide

• Length: 66 bp

>AT122950 NZ_CP038494:5059072-5059137 [Escherichia coli O157:H7]
GTCTAGGTTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Structures

Toxin

• AlphaFold DB: A0A4P7TSJ7

Antitoxin