Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type I Classification (family/domain) symER/SymE(toxin)
Location 4915258..4915670 Replicon chromosome
Accession NZ_CP038402
Organism Escherichia coli O157:H7 strain BB24-1

Toxin (Protein)


Gene name symE Uniprot ID Q8FA88
Locus tag E4U87_RS24775 Protein ID WP_000132630.1
Coordinates 4915329..4915670 (+) Length 114 a.a.

Antitoxin (RNA)


Gene name symR
Locus tag -
Coordinates 4915258..4915334 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E4U87_RS24765 4911885..4913354 + 1470 WP_001302468.1 type I restriction-modification system subunit M -
E4U87_RS24770 4913354..4915108 + 1755 WP_000110082.1 restriction endonuclease subunit S -
- 4915258..4915334 - 77 NuclAT_14 - Antitoxin
- 4915258..4915334 - 77 NuclAT_14 - Antitoxin
- 4915258..4915334 - 77 NuclAT_14 - Antitoxin
- 4915258..4915334 - 77 NuclAT_14 - Antitoxin
- 4915258..4915334 - 77 NuclAT_15 - Antitoxin
- 4915258..4915334 - 77 NuclAT_15 - Antitoxin
- 4915258..4915334 - 77 NuclAT_15 - Antitoxin
- 4915258..4915334 - 77 NuclAT_15 - Antitoxin
E4U87_RS24775 4915329..4915670 + 342 WP_000132630.1 endoribonuclease SymE Toxin
E4U87_RS24780 4915717..4916880 - 1164 WP_001304006.1 DUF1524 domain-containing protein -
E4U87_RS24785 4916928..4917809 - 882 WP_001304007.1 DUF262 domain-containing protein -
E4U87_RS24790 4917906..4918070 - 165 WP_000394274.1 DUF1127 domain-containing protein -
E4U87_RS24795 4918247..4919659 + 1413 WP_000199295.1 PLP-dependent aminotransferase family protein -
E4U87_RS24800 4919902..4920102 - 201 WP_001310455.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - espX6 4907457..4928675 21218


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(20-71)


Sequences


Toxin        


Download         Length: 114 a.a.        Molecular weight: 12294.13 Da        Isoelectric Point: 8.4982

>T122421 WP_000132630.1 NZ_CP038402:4915329-4915670 [Escherichia coli O157:H7]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Download         Length: 342 bp

>T122421 NZ_CP038402:4915329-4915670 [Escherichia coli O157:H7]
ATGACTGATACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGTTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGTGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTTGCCTGA

Antitoxin


Download         Length: 77 bp

>AT122421 NZ_CP038402:c4915334-4915258 [Escherichia coli O157:H7]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A0E0Y5T0


Antitoxin

Download structure file

References