Detailed information of TA system TA122120

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): yafN-yafO (relBE)/YafO-YafN
• Location: 1071321..1072015
• Replicon: chromosome
• Accession: NZ_CP038374
• Organism: Escherichia coli O157:H7 strain F3113

Toxin (Protein)

• Gene name: yafO
• Uniprot ID: C3TNX7
• Locus tag: E3160_RS04915
• Protein ID: WP_001263495.1
• Coordinates: 1071617..1072015 (+)
• Length: 133 a.a.

Antitoxin (Protein)

• Gene name: yafN
• Uniprot ID: S1FJN6
• Locus tag: E3160_RS04910
• Protein ID: WP_000554757.1
• Coordinates: 1071321..1071614 (+)
• Length: 98 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
E3160_RS04890	1067032..1067529	+	498	Protein_933	REP-associated tyrosine transposase RayT	-
E3160_RS04895	1067674..1069413	-	1740	WP_001358779.1	flagellar biosynthesis protein FlhA	-
E3160_RS04900	1069358..1070143	+	786	WP_000207556.1	putative lateral flagellar export/assembly protein LafU	-
E3160_RS04905	1070214..1071269	+	1056	WP_001226186.1	DNA polymerase IV	-
E3160_RS04910	1071321..1071614	+	294	WP_000554757.1	type I toxin-antitoxin system antitoxin YafN	Antitoxin
E3160_RS04915	1071617..1072015	+	399	WP_001263495.1	type II toxin-antitoxin system mRNA interferase toxin YafO	Toxin
E3160_RS04920	1072025..1072477	+	453	WP_001059871.1	GNAT family N-acetyltransferase	-
E3160_RS04925	1072784..1073050	+	267	WP_001303804.1	hypothetical protein	-
E3160_RS04930	1072962..1073519	+	558	WP_023438539.1	peptide chain release factor H	-
E3160_RS04935	1073576..1075033	-	1458	WP_001293009.1	cytosol nonspecific dipeptidase	-
E3160_RS04940	1075294..1075752	+	459	WP_001291990.1	xanthine phosphoribosyltransferase	-
-	1076348..1076428	+	81	NuclAT_12	-	-
-	1076348..1076428	+	81	NuclAT_12	-	-
-	1076348..1076428	+	81	NuclAT_12	-	-
-	1076348..1076428	+	81	NuclAT_12	-	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	-	-	1066083..1098938	32855

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• mRNA interferase toxin YafO (27-130)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 133 a.a.
• Molecular weight: 15473.86 Da
• Isoelectric Point: 8.0949

>T122120 WP_001263495.1 NZ_CP038374:1071617-1072015 [Escherichia coli O157:H7]
MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALYDDSFTWPLIKFERVAHIHLANVNNPFPPQLRQFSRT
NDESHLVYCQGAFDEQAWLLIAILKPEPHKLARDNNQMHKIGKMAEAFRMRF

Nucleotide

• Length: 399 bp

>T122120 NZ_CP038374:1071617-1072015 [Escherichia coli O157:H7]
ATGCGGGTATTCAAAACAAAACTTATTCGCCTGCAACTTACAGCAGAGGAGCTTGATGCGTTAACGGCGGATTTTATTTC
CTATAAGCGTGACGGTGTTTTGCCAGATATATTTGGTCGCGATGCACTCTACGACGACTCGTTTACTTGGCCATTAATCA
AATTTGAGCGAGTTGCTCATATTCATCTGGCAAATGTGAATAATCCATTTCCGCCACAGTTGCGCCAATTCAGCAGAACG
AATGACGAATCGCATTTGGTATATTGTCAGGGTGCGTTTGATGAGCAAGCATGGTTGCTCATTGCCATTCTGAAACCTGA
ACCTCATAAACTGGCTCGAGATAACAACCAAATGCATAAAATTGGGAAAATGGCAGAAGCGTTTCGCATGCGTTTTTGA

Antitoxin

Protein

• Length: 98 a.a.
• Molecular weight: 11233.81 Da
• Isoelectric Point: 5.9050

>AT122120 WP_000554757.1 NZ_CP038374:1071321-1071614 [Escherichia coli O157:H7]
MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSASAFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRA
EKYLNDMTDDDFNDFKE

Nucleotide

• Length: 294 bp

>AT122120 NZ_CP038374:1071321-1071614 [Escherichia coli O157:H7]
ATGCATCGAATTCTCGCTGAAAAATCGGTCAATATCACTGAATTACGTAAAAACCCAGCTAAATACTTTATTGATCAACC
GGTTGCGGTTCTTTCTAATAATCGCCCCGCAGGATATCTCTTAAGTGCCAGCGCATTCGAAGCGTTAATGGACATGCTTG
CTGAACAAGAGGAGAAAAAGCCCATAAAGGCGCGCTTCCGTCCAAGTGCTGCAAGATTAGAGGAAATTACACGCCGAGCT
GAAAAATATCTTAATGATATGACGGATGATGATTTCAATGACTTTAAGGAATAA

Structures

Antitoxin

• AlphaFold DB: S1FJN6