Detailed information of TA system TA122080

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): ldrD-rdlD/Ldr(toxin)
• Location: 277109..277330
• Replicon: chromosome
• Accession: NZ_CP038372
• Organism: Escherichia coli O157:H7 strain F6294

Toxin (Protein)

• Gene name: ldrD
• Uniprot ID: S1NWX0
• Locus tag: E3161_RS01320
• Protein ID: WP_001295224.1
• Coordinates: 277223..277330 (+)
• Length: 36 a.a.

Antitoxin (RNA)

Gene name	rdlD
Locus tag	-
Coordinates	277109..277174 (-)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
E3161_RS01300	272549..273451	+	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
E3161_RS01305	273462..274445	+	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	-
E3161_RS01310	274442..275446	+	1005	WP_000107027.1	dipeptide ABC transporter ATP-binding subunit DppF	-
E3161_RS01315	275476..276747	-	1272	WP_001301684.1	amino acid permease	-
-	277109..277174	-	66	NuclAT_18	-	Antitoxin
-	277109..277174	-	66	NuclAT_18	-	Antitoxin
-	277109..277174	-	66	NuclAT_18	-	Antitoxin
-	277109..277174	-	66	NuclAT_18	-	Antitoxin
-	277109..277174	-	66	NuclAT_23	-	Antitoxin
-	277109..277174	-	66	NuclAT_23	-	Antitoxin
-	277109..277174	-	66	NuclAT_23	-	Antitoxin
-	277109..277174	-	66	NuclAT_23	-	Antitoxin
E3161_RS01320	277223..277330	+	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	Toxin
E3161_RS01325	277417..279096	-	1680	WP_000191596.1	cellulose biosynthesis protein BcsG	-
E3161_RS01330	279093..279284	-	192	WP_000988308.1	cellulose biosynthesis protein BcsF	-
E3161_RS01335	279281..280852	-	1572	WP_001204920.1	cellulose biosynthesis protein BcsE	-
E3161_RS01340	281125..281313	+	189	WP_001063316.1	YhjR family protein	-
E3161_RS01345	281325..281522	+	198	WP_000279491.1	cell division protein	-
E3161_RS01350	281541..282077	+	537	WP_001270903.1	cellulose synthase operon protein YhjQ	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Type I toxin-antitoxin system, toxin Ldr (1-35)

Sequences

Toxin

Protein

• Length: 36 a.a.
• Molecular weight: 3882.70 Da
• Isoelectric Point: 9.0157

>T122080 WP_001295224.1 NZ_CP038372:277223-277330 [Escherichia coli O157:H7]
MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Nucleotide

• Length: 108 bp

>T122080 NZ_CP038372:277223-277330 [Escherichia coli O157:H7]
ATGACGCTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin

Nucleotide

• Length: 66 bp

>AT122080 NZ_CP038372:c277174-277109 [Escherichia coli O157:H7]
GTCTAGGTTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Structures

Toxin

• AlphaFold DB: A0A4P7TSJ7

Antitoxin