Detailed information of TA system TA121619

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): ldrD-sokW/Ldr(toxin)
• Location: 293035..293256
• Replicon: chromosome
• Accession: NZ_CP038339
• Organism: Escherichia coli O157:H7 strain H6437

Toxin (Protein)

• Gene name: ldrD
• Uniprot ID: S1NWX0
• Locus tag: E3164_RS01420
• Protein ID: WP_001295224.1
• Coordinates: 293149..293256 (+)
• Length: 36 a.a.

Antitoxin (RNA)

Gene name	sokW
Locus tag	-
Coordinates	293035..293100 (-)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
E3164_RS01400	288475..289377	+	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
E3164_RS01405	289388..290371	+	984	WP_001196486.1	dipeptide ABC transporter ATP-binding protein	-
E3164_RS01410	290368..291372	+	1005	WP_000107028.1	dipeptide ABC transporter ATP-binding subunit DppF	-
E3164_RS01415	291402..292673	-	1272	WP_001356774.1	amino acid permease	-
-	293035..293100	-	66	NuclAT_16	-	Antitoxin
-	293035..293100	-	66	NuclAT_16	-	Antitoxin
-	293035..293100	-	66	NuclAT_16	-	Antitoxin
-	293035..293100	-	66	NuclAT_16	-	Antitoxin
-	293035..293100	-	66	NuclAT_21	-	Antitoxin
-	293035..293100	-	66	NuclAT_21	-	Antitoxin
-	293035..293100	-	66	NuclAT_21	-	Antitoxin
-	293035..293100	-	66	NuclAT_21	-	Antitoxin
E3164_RS01420	293149..293256	+	108	WP_001295224.1	type I toxin-antitoxin system toxin Ldr family protein	Toxin
E3164_RS01425	293343..295022	-	1680	WP_000191596.1	cellulose biosynthesis protein BcsG	-
E3164_RS01430	295019..295210	-	192	WP_000988308.1	cellulose biosynthesis protein BcsF	-
E3164_RS01435	295207..296778	-	1572	WP_001204920.1	cellulose biosynthesis protein BcsE	-
E3164_RS01440	297051..297239	+	189	WP_001063316.1	YhjR family protein	-
E3164_RS01445	297251..297448	+	198	WP_000279508.1	AAA family ATPase	-
E3164_RS01450	297467..298003	+	537	WP_001270903.1	cellulose synthase operon protein YhjQ	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Type I toxin-antitoxin system, toxin Ldr (1-35)

Sequences

Toxin

Protein

• Length: 36 a.a.
• Molecular weight: 3882.70 Da
• Isoelectric Point: 9.0157

>T121619 WP_001295224.1 NZ_CP038339:293149-293256 [Escherichia coli O157:H7]
MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Nucleotide

• Length: 108 bp

>T121619 NZ_CP038339:293149-293256 [Escherichia coli O157:H7]
ATGACGCTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin

Nucleotide

• Length: 66 bp

>AT121619 NZ_CP038339:c293100-293035 [Escherichia coli O157:H7]
GTCTAGGTTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCT

Structures

Toxin

• AlphaFold DB: A0A4P7TSJ7

Antitoxin