Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) DinJ-YafQ (relBE)/YafQ-RelB
Location 4444631..4445170 Replicon chromosome
Accession NZ_CP038282
Organism Escherichia coli O157:H7 strain F8492

Toxin (Protein)


Gene name yafQ Uniprot ID -
Locus tag E4T53_RS22470 Protein ID WP_001303998.1
Coordinates 4444910..4445170 (+) Length 87 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID C3TP07
Locus tag E4T53_RS22465 Protein ID WP_000729705.1
Coordinates 4444631..4444891 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E4T53_RS22445 4440385..4441170 - 786 WP_000207556.1 putative lateral flagellar export/assembly protein LafU -
E4T53_RS22450 4441115..4442854 + 1740 WP_001301901.1 flagellar biosynthesis protein FlhA -
E4T53_RS22455 4442999..4443496 - 498 Protein_4401 REP-associated tyrosine transposase RayT -
E4T53_RS22460 4443672..4444445 - 774 WP_000543891.1 C40 family peptidase -
E4T53_RS22465 4444631..4444891 + 261 WP_000729705.1 type II toxin-antitoxin system antitoxin DinJ Antitoxin
E4T53_RS22470 4444910..4445170 + 261 WP_001303998.1 type II toxin-antitoxin system mRNA interferase toxin YafQ Toxin
E4T53_RS22475 4445326..4446066 + 741 WP_001225679.1 murein L,D-transpeptidase -
E4T53_RS22480 4446037..4446804 - 768 WP_001301698.1 class II glutamine amidotransferase -
E4T53_RS22485 4446909..4447487 - 579 WP_000284050.1 D-sedoheptulose 7-phosphate isomerase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(3-85)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-85)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10026.71 Da        Isoelectric Point: 10.3188

>T120980 WP_001303998.1 NZ_CP038282:4444910-4445170 [Escherichia coli O157:H7]
MNSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGT
HAALFG

Download         Length: 261 bp

>T120980 NZ_CP038282:4444910-4445170 [Escherichia coli O157:H7]
TTGAACTCGGGACAATTTTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAATAAATTGAAATATCTTAT
GACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAGGTTCATGGAAAGGTTATC
GCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGATTTGAGAGAACTGGAACT
CACGCGGCGCTCTTTGGGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9377.74 Da        Isoelectric Point: 5.0758

>AT120980 WP_000729705.1 NZ_CP038282:4444631-4444891 [Escherichia coli O157:H7]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGV

Download         Length: 261 bp

>AT120980 NZ_CP038282:4444631-4444891 [Escherichia coli O157:H7]
ATGGCTGCTAACGCATTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCGGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCGTTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References