Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/YoeB-RelB
Location 402757..403270 Replicon chromosome
Accession NZ_CP037954
Organism Chryseobacterium sp. NBC 122 strain NBC122

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag NBC122_RS01925 Protein ID WP_133438753.1
Coordinates 402757..403014 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag NBC122_RS01930 Protein ID WP_133438754.1
Coordinates 403016..403270 (-) Length 85 a.a.

Genomic Context

NBC122_RS01905NBC122_RS01935NBC122_RS01950NBC122_RS01900NBC122_RS01910NBC122_RS01915NBC122_RS01920NBC122_RS01925NBC122_RS01930NBC122_RS01940NBC122_RS01945
Location: 399040..400245 (1206 bp)
Type: Others
Protein ID: WP_133438749.1
Location: 403506..404405 (900 bp)
Type: Others
Protein ID: WP_133438755.1
Location: 407040..407669 (630 bp)
Type: Others
Protein ID: WP_133438758.1
Location: 398427..398882 (456 bp)
Type: Others
Protein ID: WP_133438748.1
Location: 400378..400878 (501 bp)
Type: Others
Protein ID: WP_133438750.1
Location: 400924..402120 (1197 bp)
Type: Others
Protein ID: WP_133438751.1
Location: 402179..402652 (474 bp)
Type: Others
Protein ID: WP_133438752.1
Location: 402757..403014 (258 bp)
Type: Toxin
Protein ID: WP_133438753.1
Location: 403016..403270 (255 bp)
Type: Antitoxin
Protein ID: WP_133438754.1
Location: 404585..405313 (729 bp)
Type: Others
Protein ID: WP_133438756.1
Location: 405319..406638 (1320 bp)
Type: Others
Protein ID: WP_133438757.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NBC122_RS01900398427..398882-456WP_133438748.1Lrp/AsnC family transcriptional regulator-
NBC122_RS01905399040..400245+1206WP_133438749.1aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme-
NBC122_RS01910400378..400878-501WP_133438750.15-(carboxyamino)imidazole ribonucleotide mutase-
NBC122_RS01915400924..402120-1197WP_133438751.1TIGR03862 family flavoprotein-
NBC122_RS01920402179..402652-474WP_133438752.1CYTH domain-containing protein-
NBC122_RS01925402757..403014-258WP_133438753.1Txe/YoeB family addiction module toxinToxin
NBC122_RS01930403016..403270-255WP_133438754.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
NBC122_RS01935403506..404405+900WP_133438755.1EamA family transporter-
NBC122_RS01940404585..405313-729WP_133438756.1ABC transporter substrate-binding protein-
NBC122_RS01945405319..406638-1320WP_133438757.1magnesium transporter-
NBC122_RS01950407040..407669+630WP_133438758.1CoA pyrophosphatase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10585.19 Da        Isoelectric Point: 8.7937

>T120563 WP_133438753.1 NZ_CP037954:c403014-402757 [Chryseobacterium sp. NBC 122]
MKYIFVDESWEDYLYWQKIDKKKLKRINDLLKDISRTPFEGIGKPEPLKHKYAGFWSRRIDDEHRLIYKFQEDDILIAKC
RFHYD

Download         Length: 258 bp

>T120563 NZ_CP037954:c403014-402757 [Chryseobacterium sp. NBC 122]
ATGAAATATATTTTCGTGGATGAATCCTGGGAGGATTATTTGTACTGGCAAAAAATCGATAAGAAAAAACTGAAACGGAT
AAATGATTTGTTAAAGGATATTTCACGAACTCCTTTTGAAGGCATCGGAAAGCCAGAACCGCTGAAACACAAATACGCTG
GATTTTGGTCGAGAAGAATCGATGATGAACACCGCTTGATTTATAAATTTCAAGAAGATGATATCTTGATTGCTAAGTGT
AGATTTCATTATGATTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9706.09 Da        Isoelectric Point: 6.3586

>AT120563 WP_133438754.1 NZ_CP037954:c403270-403016 [Chryseobacterium sp. NBC 122]
MFITSVSDFRKDIKSYLDRVSKNFETLIINRGKDSGIVVMSLEEYNSLMATNYELSSRKNEMRLDAAIEKLKSGKSYSKE
LIEE

Download         Length: 255 bp

>AT120563 NZ_CP037954:c403270-403016 [Chryseobacterium sp. NBC 122]
ATGTTTATCACTAGTGTTTCTGATTTTAGAAAAGATATCAAATCCTATTTAGACCGCGTTTCAAAAAACTTTGAAACCTT
GATCATTAATCGTGGCAAAGATTCTGGAATCGTTGTAATGTCCTTGGAAGAATACAATTCTTTGATGGCAACCAATTACG
AGCTGTCTTCGCGTAAGAATGAGATGCGATTAGATGCTGCCATCGAGAAATTGAAAAGTGGAAAATCTTATTCTAAGGAA
TTAATCGAAGAATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References