Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) hok-sok/-
Location 2864077..2864335 Replicon chromosome
Accession NZ_CP037449
Organism Escherichia coli strain ATCC 25922

Toxin (Protein)


Gene name hokC Uniprot ID S1NX00
Locus tag E0708_RS13425 Protein ID WP_000809168.1
Coordinates 2864077..2864229 (-) Length 51 a.a.

Antitoxin (RNA)


Gene name sokC
Locus tag -
Coordinates 2864278..2864335 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
E0708_RS13405 2859322..2860035 - 714 WP_001102391.1 acidic protein MsyB -
E0708_RS13410 2860061..2860465 - 405 WP_000843687.1 DUF2541 family protein -
E0708_RS13415 2860837..2862753 + 1917 WP_000516135.1 molecular chaperone DnaK -
E0708_RS13420 2862842..2863972 + 1131 WP_001118465.1 molecular chaperone DnaJ -
E0708_RS13425 2864077..2864229 - 153 WP_000809168.1 type I toxin-antitoxin system toxin MokC Toxin
- 2864278..2864335 + 58 - - Antitoxin
E0708_RS13430 2864844..2865605 + 762 WP_001274832.1 hypothetical protein -
E0708_RS13435 2865625..2867118 + 1494 WP_001443162.1 sulfatase-like hydrolase/transferase -
E0708_RS13440 2867247..2868506 + 1260 WP_000494928.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Hok/gef cell toxic protein

(6-47)


Sequences

Toxin        


Download         Length: 51 a.a.        Molecular weight: 5501.57 Da        Isoelectric Point: 7.1312

>T119965 WP_000809168.1 NZ_CP037449:c2864229-2864077 [Escherichia coli]
MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE

Download         Length: 153 bp

>T119965 NZ_CP037449:c2864229-2864077 [Escherichia coli]
ATGAAGCAGCATAAGGCGATGATTGTCGCCCTGATCGTCATCTGTATCACCGCCGTAGTGGCGGCGCTGGTAACGAGAAA
AGACCTCTGTGAGGTTCACATCCGAACTGGCCAGACGGAGGTTGCTGTATTCACGGCTTACGAATCCGAGTAA

Antitoxin


Download         Length: 58 bp

>AT119965 NZ_CP037449:2864278-2864335 [Escherichia coli]
GTTCTGCATATAGGGGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCTTTTCTCTA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1NX00

Antitoxin

Download structure file

References