Detailed information of TA system TA116834

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): DinJ-YafQ (relBE)/YafQ-RelB
• Location: 1039104..1039643
• Replicon: chromosome
• Accession: NZ_CP034808
• Organism: Escherichia coli strain 08-3914

Toxin (Protein)

• Gene name: yafQ
• Uniprot ID: -
• Locus tag: AYP36_RS05045
• Protein ID: WP_001303998.1
• Coordinates: 1039383..1039643 (+)
• Length: 87 a.a.

Antitoxin (Protein)

• Gene name: dinJ
• Uniprot ID: C3TP07
• Locus tag: AYP36_RS05040
• Protein ID: WP_000729705.1
• Coordinates: 1039104..1039364 (+)
• Length: 87 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AYP36_RS05020	1034858..1035643	-	786	WP_000207556.1	putative lateral flagellar export/assembly protein LafU	-
AYP36_RS05025	1035615..1037327	+	1713	Protein_946	flagellar biosynthesis protein FlhA	-
AYP36_RS05030	1037472..1037969	-	498	Protein_947	REP-associated tyrosine transposase RayT	-
AYP36_RS05035	1038145..1038918	-	774	WP_000543891.1	C40 family peptidase	-
AYP36_RS05040	1039104..1039364	+	261	WP_000729705.1	type II toxin-antitoxin system antitoxin DinJ	Antitoxin
AYP36_RS05045	1039383..1039643	+	261	WP_001303998.1	type II toxin-antitoxin system mRNA interferase toxin YafQ	Toxin
AYP36_RS05050	1039799..1040539	+	741	WP_001225679.1	murein L,D-transpeptidase	-
AYP36_RS05055	1040510..1041277	-	768	WP_001301698.1	class II glutamine amidotransferase	-
AYP36_RS05060	1041382..1041960	-	579	WP_000284050.1	D-sedoheptulose 7-phosphate isomerase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, YafQ-like toxin (3-85)

Antitoxin

• RelB antitoxin/Antitoxin DinJ (1-85)

Sequences

Toxin

Protein

• Length: 87 a.a.
• Molecular weight: 10026.71 Da
• Isoelectric Point: 10.3188

>T116834 WP_001303998.1 NZ_CP034808:1039383-1039643 [Escherichia coli]
MNSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGT
HAALFG

Nucleotide

• Length: 261 bp

>T116834 NZ_CP034808:1039383-1039643 [Escherichia coli]
TTGAACTCGGGACAATTTTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAATAAATTGAAATATCTTAT
GACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAGGTTCATGGAAAGGTTATC
GCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGATTTGAGAGAACTGGAACT
CACGCGGCGCTCTTTGGGTAA

Antitoxin

Protein

• Length: 87 a.a.
• Molecular weight: 9377.74 Da
• Isoelectric Point: 5.0758

>AT116834 WP_000729705.1 NZ_CP034808:1039104-1039364 [Escherichia coli]
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVDVHKAKDADDL
FDKLGV

Nucleotide

• Length: 261 bp

>AT116834 NZ_CP034808:1039104-1039364 [Escherichia coli]
ATGGCTGCTAACGCATTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCGGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCGTTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAGTTTAA