Detailed information of TA system TA116683

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): hok-sok/-
• Location: 165542..165767
• Replicon: chromosome
• Accession: NZ_CP034799
• Organism: Escherichia coli strain 2009C-4687

Toxin (Protein)

• Gene name: hokW
• Uniprot ID: -
• Locus tag: A0I37_RS00910
• Protein ID: WP_000813263.1
• Coordinates: 165542..165697 (-)
• Length: 52 a.a.

Antitoxin (RNA)

Gene name	sokW
Locus tag	-
Coordinates	165709..165767 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
A0I37_RS00875	160996..161709	-	714	WP_000261909.1	helix-turn-helix domain-containing protein	-
A0I37_RS00880	161847..162043	-	197	Protein_154	TrmB family transcriptional regulator	-
A0I37_RS00885	162330..163148	-	819	WP_000265265.1	CPBP family intramembrane metalloprotease	-
A0I37_RS00890	163300..163671	-	372	WP_000090264.1	antitermination protein	-
A0I37_RS00895	163661..164032	-	372	WP_001217436.1	RusA family crossover junction endodeoxyribonuclease	-
A0I37_RS00900	164045..165094	-	1050	WP_001265172.1	DUF968 domain-containing protein	-
A0I37_RS00905	165096..165374	-	279	WP_001341388.1	hypothetical protein	-
A0I37_RS00910	165542..165697	-	156	WP_000813263.1	type I toxin-antitoxin system toxin HokD	Toxin
-	165709..165767	+	59	-	-	Antitoxin
A0I37_RS00925	166302..167075	+	774	WP_000160654.1	alpha/beta hydrolase	-
A0I37_RS00930	167427..167840	-	414	WP_001151233.1	DUF977 family protein	-
A0I37_RS00935	167856..168626	-	771	WP_000450992.1	DUF1627 domain-containing protein	-
A0I37_RS00940	168648..169394	-	747	WP_000788745.1	ATP-binding protein	-
A0I37_RS00945	169401..170492	-	1092	WP_001205823.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Hok/gef cell toxic protein (6-47)

Sequences

Toxin

Protein

• Length: 52 a.a.
• Molecular weight: 5722.86 Da
• Isoelectric Point: 6.1531

>T116683 WP_000813263.1 NZ_CP034799:c165697-165542 [Escherichia coli]
MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRVRTGQTEVAVFTAYEPEE

Nucleotide

• Length: 156 bp

>T116683 NZ_CP034799:c165697-165542 [Escherichia coli]
ATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATAGTGACGGCACTGGTAACGAGGAA
AGACCTCTGCGAGGTACGAGTCCGAACCGGCCAGACGGAGGTCGCTGTCTTCACAGCTTACGAACCTGAGGAGTAA

Antitoxin

Nucleotide

• Length: 59 bp

>AT116683 NZ_CP034799:165709-165767 [Escherichia coli]
CCTTGCCTTTCGGCACGTAAGAGGCTAACCTAGATTTGCCGTTCATAGATTGAGCCTCA

Structures

Antitoxin