116667

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) symE-agrB/SymE(toxin)
Location 3663321..3663733 Replicon chromosome
Accession NZ_CP034797
Organism Escherichia coli strain 08-3918

Toxin (Protein)


Gene name symE Uniprot ID Q8FA88
Locus tag AYP37_RS19130 Protein ID WP_000132630.1
Coordinates 3663321..3663662 (-) Length 114 a.a.

Antitoxin (RNA)


Gene name agrB
Locus tag -
Coordinates 3663657..3663733 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
AYP37_RS19110 3659332..3660744 - 1413 WP_000199295.1 PLP-dependent aminotransferase family protein -
AYP37_RS19115 3660921..3661085 + 165 WP_000394274.1 DUF1127 domain-containing protein -
AYP37_RS19120 3661182..3662063 + 882 WP_001304007.1 DUF262 domain-containing protein -
AYP37_RS19125 3662111..3663274 + 1164 WP_001304006.1 DUF1524 domain-containing protein -
AYP37_RS19130 3663321..3663662 - 342 WP_000132630.1 endoribonuclease SymE Toxin
- 3663657..3663733 + 77 NuclAT_14 - Antitoxin
- 3663657..3663733 + 77 NuclAT_14 - Antitoxin
- 3663657..3663733 + 77 NuclAT_14 - Antitoxin
- 3663657..3663733 + 77 NuclAT_14 - Antitoxin
- 3663657..3663733 + 77 NuclAT_15 - Antitoxin
- 3663657..3663733 + 77 NuclAT_15 - Antitoxin
- 3663657..3663733 + 77 NuclAT_15 - Antitoxin
- 3663657..3663733 + 77 NuclAT_15 - Antitoxin
AYP37_RS19135 3663883..3665637 - 1755 WP_000110082.1 restriction endonuclease subunit S -
AYP37_RS19140 3665637..3667106 - 1470 WP_001302468.1 type I restriction-modification system subunit M -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Genomic island - - 3652839..3671534 18695


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SymE-like

(20-71)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12294.13 Da        Isoelectric Point: 8.4982

>T116667 WP_000132630.1 NZ_CP034797:c3663662-3663321 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEAAGFATGTVVDVKVMEGCIVLTAQPPAAAESE
LMQSLRQVCKLSARKQRQVQEFIGVIAGKQKVA

Download         Length: 342 bp

>T116667 NZ_CP034797:c3663662-3663321 [Escherichia coli]
ATGACTGATACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTA
TGCGAGTCGTTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CCGGCACGGTGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGCCGAGAGCGAA
CTGATGCAGTCGCTGCGCCAGGTGTGCAAGCTGTCGGCGCGTAAACAAAGGCAGGTGCAGGAGTTTATTGGGGTGATTGC
GGGTAAACAGAAAGTTGCCTGA

Antitoxin


Download         Length: 77 bp

>AT116667 NZ_CP034797:3663657-3663733 [Escherichia coli]
AGTCATAACTGCTATTCCCTATAAATAGTGATTGTGATTAGCGGTGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0Y5T0

Antitoxin

Download structure file

References