116188

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 1795663..1796180 Replicon chromosome
Accession NZ_CP034486
Organism Staphylococcus aureus strain PMB 64-1

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag EJN87_RS09370 Protein ID WP_000113262.1
Coordinates 1795663..1795929 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag EJN87_RS09375 Protein ID WP_000584499.1
Coordinates 1795929..1796180 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EJN87_RS09345 1791088..1791615 - 528 WP_000973468.1 GNAT family N-acetyltransferase -
EJN87_RS09350 1791859..1792683 - 825 WP_000572040.1 formate/nitrite transporter family protein -
EJN87_RS09355 1792900..1793082 - 183 WP_000230294.1 hypothetical protein -
EJN87_RS09360 1793166..1793633 - 468 WP_000153344.1 SRPBCC domain-containing protein -
EJN87_RS09365 1793819..1795369 - 1551 WP_000727763.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
EJN87_RS09370 1795663..1795929 - 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
EJN87_RS09375 1795929..1796180 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
EJN87_RS09380 1796345..1796446 - 102 Protein_1725 hypothetical protein -
EJN87_RS09385 1796453..1797052 - 600 WP_000162810.1 DsbA family protein -
EJN87_RS09390 1797071..1797433 - 363 WP_000819843.1 DUF4467 domain-containing protein -
EJN87_RS09395 1797688..1798938 + 1251 WP_001012222.1 FemA/FemB family glycyltransferase FmhA -
EJN87_RS09400 1799035..1799766 - 732 WP_000615458.1 amino acid ABC transporter ATP-binding protein -
EJN87_RS09405 1799763..1800482 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T116188 WP_000113262.1 NZ_CP034486:c1795929-1795663 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T116188 NZ_CP034486:c1795929-1795663 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAAATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT116188 WP_000584499.1 NZ_CP034486:c1796180-1795929 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT116188 NZ_CP034486:c1796180-1795929 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
AlphaFold DB T1YB60

References