Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type I Classification (family/domain) hok-sok/-
Location 15486..15726 Replicon plasmid pCRE10.1
Accession NZ_CP034401
Organism Escherichia coli strain CRE10

Toxin (Protein)


Gene name hok Uniprot ID P11895
Locus tag EJC75_RS00120 Protein ID WP_001312861.1
Coordinates 15486..15644 (-) Length 53 a.a.

Antitoxin (RNA)


Gene name sok
Locus tag -
Coordinates 15688..15726 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EJC75_RS00085 11061..11663 + 603 WP_000243712.1 transglycosylase SLT domain-containing protein -
EJC75_RS00090 11960..12781 - 822 WP_001234469.1 DUF945 domain-containing protein -
EJC75_RS00095 12900..13187 - 288 WP_000107535.1 hypothetical protein -
EJC75_RS00100 13438..14418 + 981 WP_032154316.1 IS110 family transposase -
EJC75_RS26355 14604..14795 - 192 Protein_20 single-stranded DNA-binding protein -
EJC75_RS00120 15486..15644 - 159 WP_001312861.1 type I toxin-antitoxin system Hok family toxin Toxin
- 15688..15726 - 39 NuclAT_1 - Antitoxin
- 15688..15726 - 39 NuclAT_1 - Antitoxin
- 15688..15726 - 39 NuclAT_1 - Antitoxin
- 15688..15726 - 39 NuclAT_1 - Antitoxin
- 17166..17268 - 103 NuclAT_0 - -
- 17166..17268 - 103 NuclAT_0 - -
- 17166..17268 - 103 NuclAT_0 - -
- 17166..17268 - 103 NuclAT_0 - -
EJC75_RS00130 17280..17999 - 720 WP_001276232.1 plasmid SOS inhibition protein A -
EJC75_RS00135 17996..18430 - 435 WP_000845940.1 conjugation system SOS inhibitor PsiB -
EJC75_RS00140 18485..20443 - 1959 WP_000117179.1 ParB/RepB/Spo0J family partition protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid tet(B) / catB3 / blaOXA-1 / aac(6')-Ib-cr / dfrA17 / aadA5 / qacE / mph(A) / blaTEM-1B / aph(6)-Id / aph(3'')-Ib / sul2 / aac(3)-IId - 1..134611 134611


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(8-48)


Sequences


Toxin        


Download         Length: 53 a.a.        Molecular weight: 6082.32 Da        Isoelectric Point: 9.2584

>T115907 WP_001312861.1 NZ_CP034401:c15644-15486 [Escherichia coli]
MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK

Download         Length: 159 bp

>T115907 NZ_CP034401:c15644-15486 [Escherichia coli]
ATGAAACTACCACGAAGTTCCCTTGTCTGGTGTGTGTTGATCGTGTGTCTCACACTGTTGATATTCACTTATCTGACACG
AAAATCGCTGTGCGAGATTCGTTACAGAGACGGACACAGAGAGGTGGCGGCTTTCATGGCTTACGAATCCGGTAAGTAG

Antitoxin


Download         Length: 39 bp

>AT115907 NZ_CP034401:c15726-15688 [Escherichia coli]
CATTAACCACCACGAGGCATCCCTATGTCTAGTCCACAT

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB P11895


Antitoxin

Download structure file

References