Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/MqsA(antitoxin) |
| Location | 784397..785052 | Replicon | chromosome |
| Accession | NZ_CP034363 | ||
| Organism | Pantoea sp. CCBC3-3-1 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | - |
| Locus tag | EHV07_RS03535 | Protein ID | WP_147195125.1 |
| Coordinates | 784714..785052 (-) | Length | 113 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | EHV07_RS03530 | Protein ID | WP_147195124.1 |
| Coordinates | 784397..784717 (-) | Length | 107 a.a. |
Genomic Context
Location: 780200..783424 (3225 bp)
Type: Others
Protein ID: WP_147195122.1
Type: Others
Protein ID: WP_147195122.1
Location: 783629..784363 (735 bp)
Type: Others
Protein ID: WP_147195123.1
Type: Others
Protein ID: WP_147195123.1
Location: 786141..786620 (480 bp)
Type: Others
Protein ID: WP_147200514.1
Type: Others
Protein ID: WP_147200514.1
Location: 784397..784717 (321 bp)
Type: Antitoxin
Protein ID: WP_147195124.1
Type: Antitoxin
Protein ID: WP_147195124.1
Location: 784714..785052 (339 bp)
Type: Toxin
Protein ID: WP_147195125.1
Type: Toxin
Protein ID: WP_147195125.1
Location: 785333..785947 (615 bp)
Type: Others
Protein ID: WP_147195127.1
Type: Others
Protein ID: WP_147195127.1
Location: 786653..787483 (831 bp)
Type: Others
Protein ID: WP_147195129.1
Type: Others
Protein ID: WP_147195129.1
Location: 787538..787915 (378 bp)
Type: Others
Protein ID: WP_147195131.1
Type: Others
Protein ID: WP_147195131.1
Location: 787919..788746 (828 bp)
Type: Others
Protein ID: WP_147195134.1
Type: Others
Protein ID: WP_147195134.1
Location: 788739..789731 (993 bp)
Type: Others
Protein ID: WP_147195138.1
Type: Others
Protein ID: WP_147195138.1
Loading, please wait
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHV07_RS03520 | 780200..783424 | + | 3225 | WP_147195122.1 | carbamoyl-phosphate synthase large subunit | - |
| EHV07_RS03525 | 783629..784363 | + | 735 | WP_147195123.1 | phosphatase PAP2 family protein | - |
| EHV07_RS03530 | 784397..784717 | - | 321 | WP_147195124.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin |
| EHV07_RS03535 | 784714..785052 | - | 339 | WP_147195125.1 | toxin | Toxin |
| EHV07_RS03540 | 785333..785947 | - | 615 | WP_147195127.1 | LysE family translocator | - |
| EHV07_RS03545 | 786141..786620 | + | 480 | WP_147200514.1 | type 3 dihydrofolate reductase | - |
| EHV07_RS03550 | 786653..787483 | - | 831 | WP_147195129.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH | - |
| EHV07_RS03555 | 787538..787915 | - | 378 | WP_147195131.1 | Co2+/Mg2+ efflux protein ApaG | - |
| EHV07_RS03560 | 787919..788746 | - | 828 | WP_147195134.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| EHV07_RS03565 | 788739..789731 | - | 993 | WP_147195138.1 | 4-hydroxythreonine-4-phosphate dehydrogenase PdxA | - |
Associated MGEs
Loading, please wait
MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 113 a.a. Molecular weight: 13021.95 Da Isoelectric Point: 6.7166
>T115783 WP_147195125.1 NZ_CP034363:c785052-784714 [Pantoea sp. CCBC3-3-1]
VDAIFVELPPFARHRADYLSDEAFISLQNLLMLSPWCDDVIQHTGGLRKVRLGDEDRQKGKRTGLRVIYYWWQENAQFLL
FTLYSKGEMGDLTVSQKSMLRQLLDYHMAGTP
VDAIFVELPPFARHRADYLSDEAFISLQNLLMLSPWCDDVIQHTGGLRKVRLGDEDRQKGKRTGLRVIYYWWQENAQFLL
FTLYSKGEMGDLTVSQKSMLRQLLDYHMAGTP
Download Length: 339 bp
>T115783 NZ_CP034363:c785052-784714 [Pantoea sp. CCBC3-3-1]
GTGGATGCTATCTTTGTCGAACTTCCGCCATTCGCACGCCATCGTGCGGATTATCTCTCCGATGAGGCGTTTATCAGCCT
GCAAAATCTCTTAATGCTTTCGCCATGGTGTGATGACGTTATCCAACACACGGGCGGATTGCGTAAAGTCAGGTTAGGCG
ATGAGGACCGCCAAAAAGGGAAGCGTACAGGCCTGCGGGTGATTTATTACTGGTGGCAGGAAAACGCCCAGTTCCTCCTT
TTTACGCTTTACAGTAAGGGAGAAATGGGCGATCTCACCGTCTCGCAGAAAAGCATGCTGCGTCAGTTGCTTGATTATCA
TATGGCAGGAACACCATGA
GTGGATGCTATCTTTGTCGAACTTCCGCCATTCGCACGCCATCGTGCGGATTATCTCTCCGATGAGGCGTTTATCAGCCT
GCAAAATCTCTTAATGCTTTCGCCATGGTGTGATGACGTTATCCAACACACGGGCGGATTGCGTAAAGTCAGGTTAGGCG
ATGAGGACCGCCAAAAAGGGAAGCGTACAGGCCTGCGGGTGATTTATTACTGGTGGCAGGAAAACGCCCAGTTCCTCCTT
TTTACGCTTTACAGTAAGGGAGAAATGGGCGATCTCACCGTCTCGCAGAAAAGCATGCTGCGTCAGTTGCTTGATTATCA
TATGGCAGGAACACCATGA
Antitoxin
Download Length: 107 a.a. Molecular weight: 12205.19 Da Isoelectric Point: 10.2575
>AT115783 WP_147195124.1 NZ_CP034363:c784717-784397 [Pantoea sp. CCBC3-3-1]
MKKRQLFNELVEGMDAWGEMNAGKKTLKTHRLSVEREIVLPSSELRQIRESLQLSQALFAQYLHTGLTTYQNWEQGRAKP
NKQAILLIRMVEKDPQLLQTLAGLSL
MKKRQLFNELVEGMDAWGEMNAGKKTLKTHRLSVEREIVLPSSELRQIRESLQLSQALFAQYLHTGLTTYQNWEQGRAKP
NKQAILLIRMVEKDPQLLQTLAGLSL
Download Length: 321 bp
>AT115783 NZ_CP034363:c784717-784397 [Pantoea sp. CCBC3-3-1]
ATGAAAAAACGACAGTTGTTCAATGAGCTGGTTGAAGGGATGGATGCCTGGGGAGAGATGAATGCGGGCAAAAAAACGCT
GAAAACTCACCGGCTGAGCGTTGAACGCGAAATTGTGTTGCCCTCGTCTGAGCTACGGCAGATCAGGGAGTCGCTACAGC
TTTCGCAGGCGCTGTTTGCCCAGTACTTACATACCGGGCTGACCACCTATCAAAACTGGGAGCAGGGTCGTGCTAAACCC
AACAAGCAGGCGATTCTGCTTATCCGCATGGTTGAAAAAGATCCTCAGCTGCTGCAAACCCTTGCCGGATTGTCGCTGTA
G
ATGAAAAAACGACAGTTGTTCAATGAGCTGGTTGAAGGGATGGATGCCTGGGGAGAGATGAATGCGGGCAAAAAAACGCT
GAAAACTCACCGGCTGAGCGTTGAACGCGAAATTGTGTTGCCCTCGTCTGAGCTACGGCAGATCAGGGAGTCGCTACAGC
TTTCGCAGGCGCTGTTTGCCCAGTACTTACATACCGGGCTGACCACCTATCAAAACTGGGAGCAGGGTCGTGCTAAACCC
AACAAGCAGGCGATTCTGCTTATCCGCATGGTTGAAAAAGATCCTCAGCTGCTGCAAACCCTTGCCGGATTGTCGCTGTA
G