Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 2363337..2363854 | Replicon | chromosome |
Accession | NZ_CP034349 | ||
Organism | Staphylococcus aureus strain 80wphwpl |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | A0A170NWK0 |
Locus tag | C6567_RS11965 | Protein ID | WP_000251928.1 |
Coordinates | 2363337..2363603 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A166LMC5 |
Locus tag | C6567_RS11970 | Protein ID | WP_000584497.1 |
Coordinates | 2363603..2363854 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C6567_RS11940 | 2358544..2359080 | - | 537 | WP_000024292.1 | GNAT family N-acetyltransferase | - |
C6567_RS11945 | 2359548..2360372 | - | 825 | WP_000594640.1 | formate/nitrite transporter family protein | - |
C6567_RS11950 | 2360575..2360757 | - | 183 | WP_000079140.1 | hypothetical protein | - |
C6567_RS11955 | 2360844..2361311 | - | 468 | WP_000153340.1 | SRPBCC domain-containing protein | - |
C6567_RS11960 | 2361497..2363044 | - | 1548 | WP_000727771.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
C6567_RS11965 | 2363337..2363603 | - | 267 | WP_000251928.1 | Txe/YoeB family addiction module toxin | Toxin |
C6567_RS11970 | 2363603..2363854 | - | 252 | WP_000584497.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
C6567_RS11975 | 2364018..2364118 | - | 101 | Protein_2223 | hypothetical protein | - |
C6567_RS11980 | 2364125..2364724 | - | 600 | WP_000162804.1 | DsbA family protein | - |
C6567_RS11985 | 2364743..2365105 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
C6567_RS11990 | 2365360..2366610 | + | 1251 | WP_001012237.1 | FemA/FemB family glycyltransferase FmhA | - |
C6567_RS11995 | 2366707..2367438 | - | 732 | WP_000615467.1 | amino acid ABC transporter ATP-binding protein | - |
C6567_RS12000 | 2367435..2368154 | - | 720 | WP_000479573.1 | amino acid ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10465.06 Da Isoelectric Point: 10.1628
>T115767 WP_000251928.1 NZ_CP034349:c2363603-2363337 [Staphylococcus aureus]
MVRLNITFSPQAFEDYKYFQQNDKKMVKKINELIKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MVRLNITFSPQAFEDYKYFQQNDKKMVKKINELIKSIDRNGALKGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T115767 NZ_CP034349:c2363603-2363337 [Staphylococcus aureus]
ATGGTTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTAATTAAAAGTATTGACAGAAATGGTGCGTTGAAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGTTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTAATTAAAAGTATTGACAGAAATGGTGCGTTGAAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9401.54 Da Isoelectric Point: 4.3407
>AT115767 WP_000584497.1 NZ_CP034349:c2363854-2363603 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDIVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTVTKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDIVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTVTKD
IDV
Download Length: 252 bp
>AT115767 NZ_CP034349:c2363854-2363603 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATAGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAATCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTGTAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATAGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAATCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTGTAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A170NWK0 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A166LMC5 |