Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2479160..2479677 Replicon chromosome
Accession NZ_CP034014
Organism Staphylococcus aureus strain P1D1C1

Toxin (Protein)


Gene name yoeB Uniprot ID A0A3A3ATA4
Locus tag EFD67_RS12400 Protein ID WP_000113265.1
Coordinates 2479160..2479426 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag EFD67_RS12405 Protein ID WP_000584499.1
Coordinates 2479426..2479677 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EFD67_RS12370 2474588..2475124 - 537 WP_000169317.1 GNAT family N-acetyltransferase -
EFD67_RS12375 2475358..2476182 - 825 WP_000572038.1 formate/nitrite transporter family protein -
EFD67_RS12380 2476399..2476581 - 183 WP_000230292.1 hypothetical protein -
EFD67_RS12385 2476665..2477132 - 468 WP_000153347.1 SRPBCC domain-containing protein -
EFD67_RS12390 2477318..2478865 - 1548 WP_000727772.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
EFD67_RS12395 2479054..2479125 - 72 Protein_2376 hypothetical protein -
EFD67_RS12400 2479160..2479426 - 267 WP_000113265.1 Txe/YoeB family addiction module toxin Toxin
EFD67_RS12405 2479426..2479677 - 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
EFD67_RS12410 2479842..2479943 - 102 Protein_2379 hypothetical protein -
EFD67_RS12415 2479950..2480549 - 600 WP_000162810.1 DsbA family protein -
EFD67_RS12420 2480568..2480930 - 363 WP_000819843.1 DUF4467 domain-containing protein -
EFD67_RS12425 2481185..2482435 + 1251 WP_001012225.1 FemA/FemB family glycyltransferase FmhA -
EFD67_RS12430 2482532..2483263 - 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
EFD67_RS12435 2483260..2483979 - 720 WP_000479576.1 amino acid ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-81)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10436.96 Da        Isoelectric Point: 10.0573

>T114954 WP_000113265.1 NZ_CP034014:c2479426-2479160 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T114954 NZ_CP034014:c2479426-2479160 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT114954 WP_000584499.1 NZ_CP034014:c2479677-2479426 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT114954 NZ_CP034014:c2479677-2479426 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7BWF

Antitoxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7BWF
PDB 6L8E
AlphaFold DB T1YB60

References