Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yefM-yoeB (relBE)/Txe-RelB |
Location | 2479159..2479676 | Replicon | chromosome |
Accession | NZ_CP034005 | ||
Organism | Staphylococcus aureus strain P1D7C1 |
Toxin (Protein)
Gene name | yoeB | Uniprot ID | A0A3A3ATA4 |
Locus tag | EFD70_RS12385 | Protein ID | WP_000113265.1 |
Coordinates | 2479159..2479425 (-) | Length | 89 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | T1YB60 |
Locus tag | EFD70_RS12390 | Protein ID | WP_000584499.1 |
Coordinates | 2479425..2479676 (-) | Length | 84 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EFD70_RS12355 | 2474587..2475123 | - | 537 | WP_000169317.1 | GNAT family N-acetyltransferase | - |
EFD70_RS12360 | 2475357..2476181 | - | 825 | WP_000572038.1 | formate/nitrite transporter family protein | - |
EFD70_RS12365 | 2476398..2476580 | - | 183 | WP_000230292.1 | hypothetical protein | - |
EFD70_RS12370 | 2476664..2477131 | - | 468 | WP_000153347.1 | SRPBCC domain-containing protein | - |
EFD70_RS12375 | 2477317..2478864 | - | 1548 | WP_000727772.1 | zinc ABC transporter substrate-binding lipoprotein AdcA | - |
EFD70_RS12380 | 2479053..2479124 | - | 72 | Protein_2382 | hypothetical protein | - |
EFD70_RS12385 | 2479159..2479425 | - | 267 | WP_000113265.1 | Txe/YoeB family addiction module toxin | Toxin |
EFD70_RS12390 | 2479425..2479676 | - | 252 | WP_000584499.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
EFD70_RS12395 | 2479841..2479942 | - | 102 | Protein_2385 | hypothetical protein | - |
EFD70_RS12400 | 2479949..2480548 | - | 600 | WP_000162810.1 | DsbA family protein | - |
EFD70_RS12405 | 2480567..2480929 | - | 363 | WP_000819843.1 | DUF4467 domain-containing protein | - |
EFD70_RS12410 | 2481184..2482434 | + | 1251 | WP_001012225.1 | FemA/FemB family glycyltransferase FmhA | - |
EFD70_RS12415 | 2482531..2483262 | - | 732 | WP_000615461.1 | amino acid ABC transporter ATP-binding protein | - |
EFD70_RS12420 | 2483259..2483978 | - | 720 | WP_000479576.1 | amino acid ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 89 a.a. Molecular weight: 10436.96 Da Isoelectric Point: 10.0573
>T114900 WP_000113265.1 NZ_CP034005:c2479425-2479159 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
MARLNITFSPQAFEDYKYFQQNNKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY
Download Length: 267 bp
>T114900 NZ_CP034005:c2479425-2479159 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACAATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9433.60 Da Isoelectric Point: 4.3407
>AT114900 WP_000584499.1 NZ_CP034005:c2479676-2479425 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV
Download Length: 252 bp
>AT114900 NZ_CP034005:c2479676-2479425 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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