Detailed information of TA system TA113359

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): higBA (relBE)/HigB-HigA
• Location: 4727698..4728287
• Replicon: chromosome
• Accession: NZ_CP033190
• Organism: Xanthomonas oryzae pv. oryzae strain PXO404

Toxin (Protein)

• Gene name: graT
• Uniprot ID: G7TIR7
• Locus tag: EBA23_RS23510
• Protein ID: WP_012443754.1
• Coordinates: 4728006..4728287 (-)
• Length: 94 a.a.

Antitoxin (Protein)

• Gene name: higA
• Uniprot ID: -
• Locus tag: EBA23_RS23505
• Protein ID: WP_011260746.1
• Coordinates: 4727698..4727988 (-)
• Length: 97 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
EBA23_RS23465	4722986..4723459	-	474	Protein_4221	DUF4123 domain-containing protein	-
EBA23_RS23470	4723462..4723896	-	435	WP_011409747.1	PAAR domain-containing protein	-
EBA23_RS23475	4724012..4724257	-	246	WP_069960049.1	hypothetical protein	-
EBA23_RS23485	4724593..4724925	+	333	WP_011260743.1	hypothetical protein	-
EBA23_RS23495	4725375..4726769	-	1395	WP_027703652.1	nucleoside hydrolase	-
EBA23_RS23505	4727698..4727988	-	291	WP_011260746.1	HigA family addiction module antidote protein	Antitoxin
EBA23_RS23510	4728006..4728287	-	282	WP_012443754.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
EBA23_RS23515	4728382..4730634	-	2253	WP_069960050.1	exodeoxyribonuclease V subunit alpha	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin HigB-1 (2-93)

Antitoxin

• Cro/C1-type helix-turn-helix domain (14-68)

Sequences

Toxin

Protein

• Length: 94 a.a.
• Molecular weight: 11066.83 Da
• Isoelectric Point: 10.5318

>T113359 WP_012443754.1 NZ_CP033190:c4728287-4728006 [Xanthomonas oryzae pv. oryzae]
VIRSFIDKDAEKIWLGERSRRLPADIQLVARRKLRMLNAAAHLDDLRIPPANRLEALKGQRRGQYSIRINDQWRICFRWM
EGDVVQVEIVDYH

Nucleotide

• Length: 282 bp

>T113359 NZ_CP033190:c4728287-4728006 [Xanthomonas oryzae pv. oryzae]
GTGATCAGGAGCTTTATCGACAAGGACGCCGAAAAGATCTGGCTGGGTGAGCGTTCCCGCCGGTTGCCTGCCGACATCCA
ATTGGTCGCGCGCCGCAAGTTGCGCATGCTCAATGCCGCCGCACATCTCGACGATCTGCGGATCCCGCCCGCCAACCGGC
TGGAAGCGTTGAAGGGCCAGCGGCGCGGCCAGTACAGCATCCGGATCAACGATCAATGGCGCATCTGCTTCCGATGGATG
GAAGGCGATGTGGTCCAGGTCGAAATCGTCGATTACCACTGA

Antitoxin

Protein

• Length: 97 a.a.
• Molecular weight: 10420.07 Da
• Isoelectric Point: 7.2040

>AT113359 WP_011260746.1 NZ_CP033190:c4727988-4727698 [Xanthomonas oryzae pv. oryzae]
MTVLPNIHPGDILLEEFLEPLGISQNALARATGVPPRRINEIVLGKRGITADTAVRLAAALGTSERFWLGLQADYELEQA
HRALGDLPARIKRLAA

Nucleotide

• Length: 291 bp

>AT113359 NZ_CP033190:c4727988-4727698 [Xanthomonas oryzae pv. oryzae]
ATGACGGTCCTACCCAATATCCATCCTGGCGACATTCTGCTTGAGGAGTTTCTCGAGCCTCTGGGCATCAGCCAGAATGC
ACTGGCACGCGCCACCGGCGTCCCGCCGCGCCGTATCAACGAAATCGTGCTGGGCAAGCGCGGCATCACTGCCGACACTG
CCGTGCGTCTGGCCGCCGCGTTGGGCACCTCCGAGCGCTTCTGGCTGGGCCTGCAGGCCGACTACGAGCTGGAACAGGCG
CATCGCGCGCTGGGCGATTTGCCGGCACGGATCAAGCGGCTGGCGGCGTGA

Structures

Toxin

• AlphaFold DB: A0A0K0GFW5