Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type I Classification (family/domain) ldrD-rdlD/Ldr(toxin)
Location 183171..183393 Replicon chromosome
Accession NZ_CP032667
Organism Escherichia coli str. K-12 substr. MG1655 strain K-12

Toxin (Protein)


Gene name ldrD Uniprot ID S1E8T8
Locus tag D8B36_RS00905 Protein ID WP_000141634.1
Coordinates 183286..183393 (+) Length 36 a.a.

Antitoxin (RNA)


Gene name rdlD
Locus tag -
Coordinates 183171..183237 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D8B36_RS00880 178612..179514 + 903 WP_000084677.1 dipeptide ABC transporter permease DppC -
D8B36_RS00885 179525..180508 + 984 WP_001196486.1 dipeptide ABC transporter ATP-binding protein -
D8B36_RS00890 180505..181509 + 1005 WP_000107012.1 dipeptide ABC transporter ATP-binding subunit DppF -
D8B36_RS00895 181539..182810 - 1272 WP_001295225.1 transporter -
- 183171..183237 - 67 - - Antitoxin
D8B36_RS00905 183286..183393 + 108 WP_000141634.1 type I toxin-antitoxin system toxic polypeptide LdrD Toxin
D8B36_RS00910 183480..185159 - 1680 WP_000191622.1 cellulose biosynthesis protein BcsG -
D8B36_RS00915 185156..185347 - 192 WP_000988308.1 cellulose biosynthesis protein BcsF -
D8B36_RS00920 185344..186915 - 1572 WP_001204931.1 cellulose biosynthesis protein BcsE -
D8B36_RS00925 187188..187376 + 189 WP_001063318.1 YhjR family protein -
D8B36_RS00930 187388..188140 + 753 Protein_176 cellulose biosynthesis protein BcsQ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 3916.72 Da        Isoelectric Point: 9.0157

>T112056 WP_000141634.1 NZ_CP032667:183286-183393 [Escherichia coli str. K-12 substr. MG1655]
MTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK

Download         Length: 108 bp

>T112056 NZ_CP032667:183286-183393 [Escherichia coli str. K-12 substr. MG1655]
ATGACGTTCGCAGAGCTGGGCATGGCCTTCTGGCATGATTTAGCGGCTCCGGTCATTGCTGGCATTCTTGCCAGTATGAT
CGTGAACTGGCTGAACAAGCGGAAGTAA

Antitoxin


Download         Length: 67 bp

>AT112056 NZ_CP032667:c183237-183171 [Escherichia coli str. K-12 substr. MG1655]
GTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5LBJ

Antitoxin

Download structure file

References