Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/RelE-MqsA |
| Location | 1786496..1787129 | Replicon | chromosome |
| Accession | NZ_CP032093 | ||
| Organism | Vibrio alfacsensis strain CAIM 1831 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | A0A347UQS4 |
| Locus tag | D1115_RS08240 | Protein ID | WP_012600340.1 |
| Coordinates | 1786797..1787129 (-) | Length | 111 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | D1115_RS08235 | Protein ID | WP_017049537.1 |
| Coordinates | 1786496..1786810 (-) | Length | 105 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1115_RS08215 | 1782833..1784250 | - | 1418 | Protein_1516 | SLC13 family permease | - |
| D1115_RS08220 | 1784678..1785838 | - | 1161 | Protein_1517 | IS3 family transposase | - |
| D1115_RS08225 | 1785905..1786357 | - | 453 | Protein_1518 | hypothetical protein | - |
| D1115_RS08230 | 1786389..1786481 | - | 93 | WP_078581101.1 | DUF3265 domain-containing protein | - |
| D1115_RS08235 | 1786496..1786810 | - | 315 | WP_017049537.1 | DNA-binding transcriptional regulator | Antitoxin |
| D1115_RS08240 | 1786797..1787129 | - | 333 | WP_012600340.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| D1115_RS08245 | 1787352..1787765 | - | 414 | WP_128811030.1 | VOC family protein | - |
| D1115_RS08250 | 1787839..1787928 | - | 90 | WP_128812283.1 | DUF3265 domain-containing protein | - |
| D1115_RS23105 | 1788057..1788299 | + | 243 | WP_164837195.1 | hypothetical protein | - |
| D1115_RS08260 | 1788573..1788815 | - | 243 | WP_128811031.1 | hypothetical protein | - |
| D1115_RS08265 | 1788913..1789179 | - | 267 | WP_128811032.1 | hypothetical protein | - |
| D1115_RS08270 | 1789250..1789339 | - | 90 | WP_075984317.1 | DUF3265 domain-containing protein | - |
| D1115_RS08275 | 1789457..1790421 | + | 965 | Protein_1528 | IS30 family transposase | - |
| D1115_RS08285 | 1790890..1791486 | - | 597 | WP_086716338.1 | methyltransferase domain-containing protein | - |
| D1115_RS08290 | 1791524..1791646 | - | 123 | WP_080996720.1 | DUF3265 domain-containing protein | - |
| D1115_RS08295 | 1791727..1791969 | + | 243 | WP_005442033.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1784678..1807250 | 22572 | |
| - | inside | IScluster/Tn | - | - | 1784678..1795651 | 10973 | |
| - | inside | Integron | - | - | 1786797..1876300 | 89503 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 111 a.a. Molecular weight: 12906.76 Da Isoelectric Point: 10.0960
>T111095 WP_012600340.1 NZ_CP032093:c1787129-1786797 [Vibrio alfacsensis]
MKSVFVESTIFEKYRNEYLSDDEFRLFQAELMSNPKQGDVIQGTGGLRKIRVASKGKGKRGGSRVIYYFLDEKRRFYLLT
IYGKNEMSDLTADQKKQLKAFMEAWRNEQS
MKSVFVESTIFEKYRNEYLSDDEFRLFQAELMSNPKQGDVIQGTGGLRKIRVASKGKGKRGGSRVIYYFLDEKRRFYLLT
IYGKNEMSDLTADQKKQLKAFMEAWRNEQS
Download Length: 333 bp
>T111095 NZ_CP032093:c1787129-1786797 [Vibrio alfacsensis]
ATGAAAAGTGTATTTGTCGAATCAACCATATTTGAAAAGTACCGTAATGAATACCTCAGCGATGATGAGTTTAGGCTTTT
TCAAGCTGAGTTAATGTCTAACCCGAAGCAGGGTGACGTGATTCAAGGTACAGGTGGTTTGCGAAAGATTCGAGTTGCAA
GTAAAGGTAAGGGCAAGCGTGGTGGCTCTCGCGTTATCTATTACTTCCTCGATGAAAAGCGTCGTTTCTACTTGCTGACG
ATTTACGGCAAGAATGAAATGTCCGACTTAACCGCAGACCAAAAGAAACAACTAAAGGCTTTTATGGAGGCGTGGCGTAA
TGAGCAATCGTGA
ATGAAAAGTGTATTTGTCGAATCAACCATATTTGAAAAGTACCGTAATGAATACCTCAGCGATGATGAGTTTAGGCTTTT
TCAAGCTGAGTTAATGTCTAACCCGAAGCAGGGTGACGTGATTCAAGGTACAGGTGGTTTGCGAAAGATTCGAGTTGCAA
GTAAAGGTAAGGGCAAGCGTGGTGGCTCTCGCGTTATCTATTACTTCCTCGATGAAAAGCGTCGTTTCTACTTGCTGACG
ATTTACGGCAAGAATGAAATGTCCGACTTAACCGCAGACCAAAAGAAACAACTAAAGGCTTTTATGGAGGCGTGGCGTAA
TGAGCAATCGTGA
Antitoxin
Download Length: 105 a.a. Molecular weight: 11704.17 Da Isoelectric Point: 6.3290
>AT111095 WP_017049537.1 NZ_CP032093:c1786810-1786496 [Vibrio alfacsensis]
MSNRDLFAELSSALVEAKEHSEGKLTLKTHQVNDISELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSAP
NGQAVTLLKLVQRHPETLSHIAEL
MSNRDLFAELSSALVEAKEHSEGKLTLKTHQVNDISELNISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSAP
NGQAVTLLKLVQRHPETLSHIAEL
Download Length: 315 bp
>AT111095 NZ_CP032093:c1786810-1786496 [Vibrio alfacsensis]
ATGAGCAATCGTGATTTATTTGCAGAGTTAAGTTCAGCACTTGTTGAGGCTAAAGAGCATTCAGAGGGCAAGCTTACCCT
TAAAACTCATCAAGTTAACGACATCAGTGAGTTAAATATCTCACCTGATGAAATTGTGAGTATTCGAGAGCAGTTTAATA
TGTCTCGTGGTGTGTTTGCTCGTTTGTTGCATACATCATCTCGTACGTTAGAAAACTGGGAACAAGGGCGTAGCGCACCA
AATGGACAAGCAGTAACCCTTCTAAAGTTGGTTCAACGTCACCCAGAAACCCTGTCGCACATCGCTGAGCTATAA
ATGAGCAATCGTGATTTATTTGCAGAGTTAAGTTCAGCACTTGTTGAGGCTAAAGAGCATTCAGAGGGCAAGCTTACCCT
TAAAACTCATCAAGTTAACGACATCAGTGAGTTAAATATCTCACCTGATGAAATTGTGAGTATTCGAGAGCAGTTTAATA
TGTCTCGTGGTGTGTTTGCTCGTTTGTTGCATACATCATCTCGTACGTTAGAAAACTGGGAACAAGGGCGTAGCGCACCA
AATGGACAAGCAGTAACCCTTCTAAAGTTGGTTCAACGTCACCCAGAAACCCTGTCGCACATCGCTGAGCTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|