110947

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 2495910..2496433 Replicon chromosome
Accession NZ_CP032051
Organism Staphylococcus aureus strain O17

Toxin (Protein)


Gene name yoeB Uniprot ID X5DYX7
Locus tag SaO17_RS12915 Protein ID WP_000074048.1
Coordinates 2495910..2496176 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A2S6D1W5
Locus tag SaO17_RS12920 Protein ID WP_000587617.1
Coordinates 2496176..2496433 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SaO17_RS12895 2491120..2492307 - 1188 WP_000026189.1 MFS transporter -
SaO17_RS12900 2492702..2493478 - 777 WP_000072151.1 iron export ABC transporter permease subunit FetB -
SaO17_RS12905 2493471..2494133 - 663 WP_000923508.1 ATP-binding cassette domain-containing protein -
SaO17_RS12910 2494478..2495554 - 1077 WP_001076674.1 M42 family metallopeptidase -
SaO17_RS12915 2495910..2496176 - 267 WP_000074048.1 Txe/YoeB family addiction module toxin Toxin
SaO17_RS12920 2496176..2496433 - 258 WP_000587617.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
SaO17_RS12930 2496794..2497249 + 456 WP_000732082.1 DUF1307 domain-containing protein -
SaO17_RS12935 2497417..2498994 - 1578 WP_065315873.1 FMN-binding glutamate synthase family protein -
SaO17_RS12940 2499188..2499937 + 750 WP_000072455.1 CPBP family intramembrane metalloprotease -
SaO17_RS12945 2500161..2501354 - 1194 WP_000675398.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(25-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10648.23 Da        Isoelectric Point: 10.1384

>T110947 WP_000074048.1 NZ_CP032051:c2496176-2495910 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLKKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T110947 NZ_CP032051:c2496176-2495910 [Staphylococcus aureus]
ATGAGCAATTACACGGTTAAGATTAAAAATTCAGCGAAATCAGATTTAAAGAAAATAAAACATTCTTATTTAAAGAAGTC
ATTTTTAGAAATTGTTGAGACTTTAAAAAATGATCCGTATAAAATAACACAATCCTTTGAAAAATTAGAACCTAAATATT
TAGAGCGATATTCAAGAAGAATTAACCATCAGCACAGGGTCGTCTATACCGTAGATGATCGAAATAAAGAAGTATTGATA
CTATCGGCATGGTCACATTATGATTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9747.71 Da        Isoelectric Point: 4.1353

>AT110947 WP_000587617.1 NZ_CP032051:c2496433-2496176 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDSSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT110947 NZ_CP032051:c2496433-2496176 [Staphylococcus aureus]
ATGATTATCACTAGCCCTACAGAAGCGAGAAAAGATTTTTATCAATTACTAAAAAATGTTAATAATAATCACGAACCAAT
TTATATTAGTGGCAATAATGCCGAAAATAATGCTGTGATTATAGGTTTAGAAGATTGGAAAAGTATACAAGAGACAATAT
ATCTTGAATCTACTGGTACAATGGACAAAGTAAGAGAAAGAGAAAAAGATAGTAGTGGTACAACAAATATAGATGATATT
GATTGGGATAATCTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 7V6W
PDB 7V5Y
PDB 7V5Z

Antitoxin

Source ID Structure
AlphaFold DB A0A2S6D1W5

References