110292

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yefM-yoeB (relBE)/Txe-RelB
Location 321261..321778 Replicon chromosome
Accession NZ_CP031839
Organism Staphylococcus aureus strain NX-T55

Toxin (Protein)


Gene name yoeB Uniprot ID T1YC79
Locus tag D1O27_RS01685 Protein ID WP_000113262.1
Coordinates 321512..321778 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID T1YB60
Locus tag D1O27_RS01680 Protein ID WP_000584499.1
Coordinates 321261..321512 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D1O27_RS01650 316959..317678 + 720 WP_000479576.1 amino acid ABC transporter permease -
D1O27_RS01655 317675..318406 + 732 WP_000615461.1 amino acid ABC transporter ATP-binding protein -
D1O27_RS01660 318503..319753 - 1251 WP_001012223.1 FemA/FemB family glycyltransferase FmhA -
D1O27_RS01665 320008..320370 + 363 WP_000819843.1 DUF4467 domain-containing protein -
D1O27_RS01670 320389..320988 + 600 WP_000162813.1 DsbA family protein -
D1O27_RS01675 320995..321096 + 102 WP_031774922.1 hypothetical protein -
D1O27_RS01680 321261..321512 + 252 WP_000584499.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
D1O27_RS01685 321512..321778 + 267 WP_000113262.1 Txe/YoeB family addiction module toxin Toxin
D1O27_RS01690 322074..323624 + 1551 WP_000727763.1 zinc ABC transporter substrate-binding lipoprotein AdcA -
D1O27_RS01695 323810..324277 + 468 WP_000153344.1 SRPBCC domain-containing protein -
D1O27_RS01700 324361..324543 + 183 WP_000230294.1 hypothetical protein -
D1O27_RS01705 324760..325584 + 825 WP_000572040.1 formate/nitrite transporter family protein -
D1O27_RS01710 325817..326353 + 537 WP_031585827.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10437.95 Da        Isoelectric Point: 9.9143

>T110292 WP_000113262.1 NZ_CP031839:321512-321778 [Staphylococcus aureus]
MARLNITFSPQAFEDYKYFQQNDKKMVKKINELLKSIDRNGALEGIGKPEKLKSNLTGYYSRRINHEHRLVYTVDDNHIK
IASCKYHY

Download         Length: 267 bp

>T110292 NZ_CP031839:321512-321778 [Staphylococcus aureus]
ATGGCTAGGTTAAATATTACGTTTTCGCCTCAAGCCTTTGAAGATTATAAGTATTTTCAGCAGAACGATAAAAAAATGGT
GAAGAAGATTAATGAGTTACTTAAAAGTATTGACAGAAATGGTGCATTGGAAGGTATAGGTAAGCCTGAAAAGTTAAAAT
CGAATCTGACTGGGTATTATAGTAGACGTATCAATCACGAACATAGATTGGTTTATACAGTAGATGACAATCATATAAAA
ATAGCATCATGTAAATACCATTATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9433.60 Da        Isoelectric Point: 4.3407

>AT110292 WP_000584499.1 NZ_CP031839:321261-321512 [Staphylococcus aureus]
MIIKNYSYARQNLKALMTKVNDDSDMVTVTSTDDKNVVIMSESDYNSMMETLYLQQNPNNAEHLAQSIADLERGKTITKD
IDV

Download         Length: 252 bp

>AT110292 NZ_CP031839:321261-321512 [Staphylococcus aureus]
ATGATTATTAAAAATTATTCATACGCTCGACAGAATTTAAAGGCACTTATGACAAAAGTAAATGATGATAGTGATATGGT
AACTGTAACATCTACTGATGATAAAAACGTAGTAATCATGTCAGAATCAGATTATAACTCCATGATGGAAACACTTTACC
TCCAACAGAACCCAAATAATGCTGAACACTTAGCTCAATCAATTGCAGATCTAGAACGTGGGAAAACTATAACGAAAGAT
ATAGATGTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6L8G
PDB 6L8F
PDB 7CUA
PDB 6L8E

Antitoxin

Source ID Structure
AlphaFold DB T1YB60

References