Detailed information of TA system TA108820

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): sprA1-sprA1AS/-
• Location: 2685887..2686048
• Replicon: chromosome
• Accession: NZ_CP031275
• Organism: Staphylococcus xylosus strain

Toxin (Protein)

• Gene name: sprA1
• Uniprot ID: -
• Locus tag: DWB98_RS12720
• Protein ID: WP_002441941.1
• Coordinates: 2685953..2686048 (-)
• Length: 32 a.a.

Antitoxin (RNA)

Gene name	sprA1AS
Locus tag	-
Coordinates	2685887..2685924 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
DWB98_RS12685	2680908..2681372	+	465	WP_042363441.1	hypothetical protein	-
DWB98_RS12690	2681572..2681880	-	309	WP_107543257.1	hypothetical protein	-
DWB98_RS12695	2682043..2682735	+	693	WP_171031833.1	hypothetical protein	-
DWB98_RS12700	2682921..2683007	-	87	WP_107539440.1	type I toxin-antitoxin system Fst family toxin	-
DWB98_RS12705	2683343..2684305	-	963	WP_042363443.1	nitronate monooxygenase	-
DWB98_RS12710	2684430..2684801	+	372	WP_042363444.1	helix-turn-helix transcriptional regulator	-
DWB98_RS12715	2684975..2685700	+	726	WP_042363445.1	NAD(P)-binding domain-containing protein	-
-	2685887..2685924	+	38	-	-	Antitoxin
DWB98_RS12720	2685953..2686048	-	96	WP_002441941.1	type I toxin-antitoxin system Fst family toxin	Toxin
DWB98_RS12725	2686183..2687356	-	1174	Protein_2461	ABC transporter permease	-
DWB98_RS12730	2687353..2688033	-	681	WP_069809817.1	ABC transporter ATP-binding protein	-
DWB98_RS12735	2688030..2689145	-	1116	WP_107542877.1	RND transporter	-
DWB98_RS12740	2689566..2690939	+	1374	WP_186433724.1	YfcC family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Sequences

Toxin

Protein

• Length: 32 a.a.
• Molecular weight: 3560.34 Da
• Isoelectric Point: 9.9256

>T108820 WP_002441941.1 NZ_CP031275:c2686048-2685953 [Staphylococcus xylosus]
MLMIFVHIIAPVISGCAVAYFTYWLSSKRNK

Nucleotide

• Length: 96 bp

>T108820 NZ_CP031275:c2686048-2685953 [Staphylococcus xylosus]
ATGCTTATGATCTTCGTTCACATCATTGCACCAGTCATTAGTGGCTGTGCAGTTGCGTACTTTACTTACTGGCTTAGTAG
TAAACGCAATAAATAG

Antitoxin

Nucleotide

• Length: 38 bp

>AT108820 NZ_CP031275:2685887-2685924 [Staphylococcus xylosus]
TATGCACCAATCCCCTCACTATTTGCGGTAGTGAGGGG

Structures

Antitoxin