107916

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-HigA
Location 4452936..4453498 Replicon chromosome
Accession NZ_CP030768
Organism Escherichia coli strain 2017C-4173W12

Toxin (Protein)


Gene name higB Uniprot ID L4J948
Locus tag DSB71_RS23280 Protein ID WP_000605676.1
Coordinates 4453220..4453498 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID S1PAQ1
Locus tag DSB71_RS23275 Protein ID WP_000781370.1
Coordinates 4452936..4453220 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DSB71_RS23260 4448118..4451165 + 3048 WP_012602782.1 formate dehydrogenase-N subunit alpha -
DSB71_RS23265 4451178..4452062 + 885 WP_001240565.1 formate dehydrogenase N subunit beta -
DSB71_RS23270 4452055..4452708 + 654 WP_000045646.1 formate dehydrogenase-N subunit gamma -
DSB71_RS23275 4452936..4453220 - 285 WP_000781370.1 HigA family addiction module antidote protein Antitoxin
DSB71_RS23280 4453220..4453498 - 279 WP_000605676.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DSB71_RS23285 4453684..4454694 - 1011 WP_000642407.1 alcohol dehydrogenase AdhP -
DSB71_RS23290 4454828..4456525 - 1698 WP_000433464.1 malate dehydrogenase -
DSB71_RS23295 4456682..4456819 - 138 WP_000841554.1 stationary-phase-induced ribosome-associated protein -
DSB71_RS23300 4456921..4457136 - 216 WP_000495766.1 biofilm-dependent modulation protein -
DSB71_RS23310 4457481..4457912 + 432 WP_000152305.1 peroxiredoxin OsmC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(4-92)

Antitoxin

Toxin-antitoxin system, antidote protein, HigA

(1-88)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10521.10 Da        Isoelectric Point: 7.3562

>T107916 WP_000605676.1 NZ_CP030768:c4453498-4453220 [Escherichia coli]
MIMNFRHKGLRDLFLLGKTSGVIPTQVKRLRHRLAVIDAASCLADIDMPGYRLHPLSGDRDGIWAISVSGNWRITFEFVN
GDAYILDYEDYH

Download         Length: 279 bp

>T107916 NZ_CP030768:c4453498-4453220 [Escherichia coli]
ATGATAATGAATTTCAGACACAAGGGATTGCGTGACTTGTTTCTTCTCGGCAAAACCTCCGGCGTTATACCGACGCAAGT
CAAACGATTACGCCATCGACTTGCTGTGATTGATGCGGCAAGCTGTCTTGCTGATATCGATATGCCCGGTTACCGACTAC
ACCCGTTAAGCGGCGATCGCGATGGAATTTGGGCGATATCTGTCTCGGGCAACTGGCGAATCACATTTGAATTCGTCAAT
GGCGATGCATACATACTGGATTACGAGGACTATCACTGA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10401.08 Da        Isoelectric Point: 8.8567

>AT107916 WP_000781370.1 NZ_CP030768:c4453220-4452936 [Escherichia coli]
MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAE
KTVDVSRLRRLVTQ

Download         Length: 285 bp

>AT107916 NZ_CP030768:c4453220-4452936 [Escherichia coli]
ATGAAAATGGCCAATCATCCCCGCCCGGGGGACATTATTCAGGAATCACTGGACGAACTTAATGTCAGCCTGCGCGAGTT
TGCCAGAGCAATGGAAATTGCGCCCTCAACGGCAAGCCGATTGCTGACCGGAAAAGCAGCTTTGACGCCAGAAATGGCAA
TTAAACTTTCCGTGGTGATCGGCAGTTCGCCGCAAATGTGGCTGAATCTGCAAAACGCCTGGAGTCTGGCAGAGGCTGAA
AAAACGGTGGATGTGTCGCGATTACGCCGTCTGGTTACGCAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829G6T1

Antitoxin

Source ID Structure
AlphaFold DB A0A829CUG6

References