Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/MqsA(antitoxin)
Location 83536..84187 Replicon plasmid pSA20083530.1
Accession NZ_CP030204
Organism Salmonella enterica strain SA20083530

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag CHD70_RS27345 Protein ID WP_080102217.1
Coordinates 83536..83880 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag CHD70_RS27350 Protein ID WP_114047648.1
Coordinates 83873..84187 (+) Length 105 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CHD70_RS27330 78807..81098 - 2292 WP_114047645.1 conjugal transfer protein TrbC -
CHD70_RS27335 81091..82161 - 1071 WP_114047646.1 DsbC family protein -
CHD70_RS27340 82180..83388 - 1209 WP_114047647.1 IncI1-type conjugal transfer protein TrbA -
CHD70_RS27345 83536..83880 + 345 WP_080102217.1 toxin Toxin
CHD70_RS27350 83873..84187 + 315 WP_114047648.1 type II toxin-antitoxin system MqsA family antitoxin Antitoxin
CHD70_RS27355 84301..85610 - 1310 Protein_97 IS3 family transposase -
CHD70_RS27360 85638..85778 - 141 WP_114047649.1 hypothetical protein -
CHD70_RS27365 86008..86655 - 648 WP_205318806.1 plasmid IncI1-type surface exclusion protein ExcA -
CHD70_RS27370 86735..87034 - 300 Protein_100 hypothetical protein -
CHD70_RS27375 87060..88091 - 1032 WP_114046824.1 IS630 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..138648 138648


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin SpoIISA, type II toxin-antitoxin system

(3-239)

Antitoxin

Antitoxin SpoIISB

(1-56)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 14758.04 Da        Isoelectric Point: 12.8568

>T107344 WP_080102217.1 NZ_CP030204:83536-83880 [Salmonella enterica]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Download         Length: 345 bp

>T107344 NZ_CP030204:83536-83880 [Salmonella enterica]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

Antitoxin


Download         Length: 105 a.a.        Molecular weight: 13476.30 Da        Isoelectric Point: 12.8170

>AT107344 WP_114047648.1 NZ_CP030204:83873-84187 [Salmonella enterica]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKKKKKKKKK

Download         Length: 315 bp

>AT107344 NZ_CP030204:83873-84187 [Salmonella enterica]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References