Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) higBA (relBE)/HigB-VapI
Location 3047849..3048460 Replicon chromosome
Accession NZ_CP030053
Organism Bradyrhizobium guangzhouense strain CCBAU 51670

Toxin (Protein)


Gene name graT Uniprot ID -
Locus tag XH91_RS14675 Protein ID WP_128951236.1
Coordinates 3047849..3048133 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag XH91_RS14680 Protein ID WP_128951237.1
Coordinates 3048143..3048460 (+) Length 106 a.a.

Genomic Context

XH91_RS14665XH91_RS14670XH91_RS14675XH91_RS14680XH91_RS14685XH91_RS14695XH91_RS14705XH91_RS14710XH91_RS14660XH91_RS14690
Location: 3045057..3046463 (1407 bp)
Type: Others
Protein ID: WP_164934076.1
Location: 3046460..3047794 (1335 bp)
Type: Others
Protein ID: WP_128951235.1
Location: 3047849..3048133 (285 bp)
Type: Toxin
Protein ID: WP_128951236.1
Location: 3048143..3048460 (318 bp)
Type: Antitoxin
Protein ID: WP_128951237.1
Location: 3048457..3049671 (1215 bp)
Type: Others
Protein ID: WP_128951238.1
Location: 3050320..3051114 (795 bp)
Type: Others
Protein ID: WP_128951240.1
Location: 3051170..3052813 (1644 bp)
Type: Others
Protein ID: WP_164934075.1
Location: 3052810..3053073 (264 bp)
Type: Others
Protein ID: WP_074117543.1
Location: 3043109..3044740 (1632 bp)
Type: Others
Protein ID: WP_164934077.1
Location: 3049797..3050243 (447 bp)
Type: Others
Protein ID: WP_128951239.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
XH91_RS146603043109..3044740-1632WP_164934077.1OprO/OprP family phosphate-selective porin-
XH91_RS146653045057..3046463+1407WP_164934076.1DegQ family serine endoprotease-
XH91_RS146703046460..3047794+1335WP_128951235.1replication-associated recombination protein A-
XH91_RS146753047849..3048133+285WP_128951236.1type II toxin-antitoxin system RelE/ParE family toxinToxin
XH91_RS146803048143..3048460+318WP_128951237.1HigA family addiction module antidote proteinAntitoxin
XH91_RS146853048457..3049671+1215WP_128951238.1RluA family pseudouridine synthase-
XH91_RS146903049797..3050243-447WP_128951239.1hypothetical protein-
XH91_RS146953050320..3051114+795WP_128951240.1ATPase-
XH91_RS147053051170..3052813+1644WP_164934075.1flagellar hook-length control protein FliK-
XH91_RS147103052810..3053073+264WP_074117543.1EscU/YscU/HrcU family type III secretion system export apparatus switch protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-1

(1-94)

Antitoxin

Cro/C1-type helix-turn-helix domain

(13-64)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10355.53 Da        Isoelectric Point: 5.6907

>T106958 WP_128951236.1 NZ_CP030053:3047849-3048133 [Bradyrhizobium guangzhouense]
MIVSYGDKRTERFAAGQHVKEFSGFARQAETRLDRLDAATGPADLAALPGNRFEALKGDRAGRFSIGTSDQWRICFGWPE
GSPGPIDVEIVDYH

Download         Length: 285 bp

>T106958 NZ_CP030053:3047849-3048133 [Bradyrhizobium guangzhouense]
ATGATCGTCAGCTACGGCGACAAGCGCACCGAGCGATTTGCCGCTGGCCAGCACGTCAAGGAATTCTCGGGATTTGCTCG
GCAGGCAGAGACGCGCCTCGATAGATTGGACGCGGCAACCGGTCCGGCCGATTTGGCGGCACTGCCTGGTAATCGATTTG
AAGCCTTGAAGGGCGATCGCGCTGGACGGTTCTCGATTGGGACCAGCGATCAATGGCGGATCTGCTTCGGATGGCCGGAG
GGATCGCCCGGTCCAATTGATGTAGAGATCGTCGACTATCACTGA

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11672.32 Da        Isoelectric Point: 10.5812

>AT106958 WP_128951237.1 NZ_CP030053:3048143-3048460 [Bradyrhizobium guangzhouense]
MPRTPIHPGEQLAEELRELGITAAELSRQLDVPVNRITGIINGQRGITADTALRLGHWFGTSPQFWMNLQQQYELRLAEK
EVGAQVASLPRRANAQSTRKLGKTA

Download         Length: 318 bp

>AT106958 NZ_CP030053:3048143-3048460 [Bradyrhizobium guangzhouense]
ATGCCCCGCACGCCCATTCATCCCGGCGAACAGCTTGCCGAAGAGCTGCGCGAACTCGGCATCACGGCCGCGGAGTTGTC
GCGTCAGCTCGACGTACCCGTGAATCGCATCACGGGCATCATCAACGGTCAGCGGGGCATTACGGCCGATACGGCACTTC
GTCTTGGTCACTGGTTCGGCACGAGCCCACAGTTCTGGATGAACCTTCAACAACAATATGAGCTGCGGCTGGCGGAAAAG
GAGGTTGGCGCGCAGGTTGCGTCGCTGCCCCGCCGTGCCAACGCGCAGTCGACACGAAAGCTTGGAAAAACAGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References