Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
| Location | 73050..73707 | Replicon | plasmid pR16.0676_90k |
| Accession | NZ_CP029802 | ||
| Organism | Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 | ||
Toxin (Protein)
| Gene name | higB | Uniprot ID | U3PDC3 |
| Locus tag | DNA64_RS24485 | Protein ID | WP_000270043.1 |
| Coordinates | 73050..73400 (+) | Length | 117 a.a. |
Antitoxin (Protein)
| Gene name | higA | Uniprot ID | - |
| Locus tag | DNA64_RS24490 | Protein ID | WP_000124640.1 |
| Coordinates | 73405..73707 (+) | Length | 101 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DNA64_RS24435 | 68361..68540 | + | 180 | Protein_85 | helix-turn-helix transcriptional regulator | - |
| DNA64_RS24440 | 68605..69309 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| DNA64_RS24445 | 69524..70021 | - | 498 | WP_000062185.1 | hypothetical protein | - |
| DNA64_RS24450 | 70024..70512 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| DNA64_RS24455 | 70609..70944 | + | 336 | WP_000683476.1 | hypothetical protein | - |
| DNA64_RS24460 | 70959..71429 | - | 471 | WP_001281821.1 | hypothetical protein | - |
| DNA64_RS24465 | 71422..71793 | - | 372 | WP_000516916.1 | hypothetical protein | - |
| DNA64_RS24470 | 71804..71998 | - | 195 | WP_000343597.1 | hypothetical protein | - |
| DNA64_RS24480 | 72339..72887 | - | 549 | WP_001061574.1 | transcriptional regulator | - |
| DNA64_RS24485 | 73050..73400 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| DNA64_RS24490 | 73405..73707 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin |
| DNA64_RS24495 | 73734..74027 | - | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| DNA64_RS24500 | 74115..74387 | - | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| DNA64_RS24505 | 74445..74972 | - | 528 | WP_001236377.1 | thermonuclease family protein | - |
| DNA64_RS24515 | 75203..76060 | - | 858 | WP_001167032.1 | hypothetical protein | - |
| DNA64_RS24520 | 76047..76277 | - | 231 | WP_000972663.1 | hypothetical protein | - |
| DNA64_RS24525 | 76277..76795 | - | 519 | WP_000210756.1 | nitrite reductase | - |
| DNA64_RS24530 | 76792..77238 | - | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| DNA64_RS24535 | 77238..77597 | - | 360 | WP_000422768.1 | hypothetical protein | - |
| DNA64_RS24540 | 77654..78082 | - | 429 | WP_000591074.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Non-Mobilizable plasmid | - | - | 1..90137 | 90137 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 15014.38 Da Isoelectric Point: 12.8644
>T106729 WP_000270043.1 NZ_CP029802:73050-73400 [Salmonella enterica subsp. enterica serovar Anatum]
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Download Length: 351 bp
>T106729 NZ_CP029802:73050-73400 [Salmonella enterica subsp. enterica serovar Anatum]
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Antitoxin
Download Length: 101 a.a. Molecular weight: 12963.60 Da Isoelectric Point: 12.8000
>AT106729 WP_000124640.1 NZ_CP029802:73405-73707 [Salmonella enterica subsp. enterica serovar Anatum]
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Download Length: 303 bp
>AT106729 NZ_CP029802:73405-73707 [Salmonella enterica subsp. enterica serovar Anatum]
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Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|