Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | higBA (relBE)/COG4683-HTH_37 |
Location | 31726..32377 | Replicon | plasmid pYP14c |
Accession | NZ_CP029792 | ||
Organism | Psychrobacter sp. YP14 |
Toxin (Protein)
Gene name | higB | Uniprot ID | - |
Locus tag | DLE54_RS11935 | Protein ID | WP_110817442.1 |
Coordinates | 31726..32073 (+) | Length | 116 a.a. |
Antitoxin (Protein)
Gene name | higA | Uniprot ID | - |
Locus tag | DLE54_RS11940 | Protein ID | WP_011954794.1 |
Coordinates | 32075..32377 (+) | Length | 101 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
DLE54_RS11900 | 27007..27465 | - | 459 | WP_025651570.1 | DIP1984 family protein | - |
DLE54_RS11905 | 27514..27819 | + | 306 | WP_162617755.1 | hypothetical protein | - |
DLE54_RS11910 | 28138..28566 | - | 429 | WP_110817438.1 | hypothetical protein | - |
DLE54_RS11915 | 28837..29256 | + | 420 | WP_110817439.1 | PPC domain-containing protein | - |
DLE54_RS11920 | 29366..30049 | - | 684 | WP_110817440.1 | DUF421 domain-containing protein | - |
DLE54_RS11925 | 30327..30530 | + | 204 | WP_044298583.1 | CsbD family protein | - |
DLE54_RS11930 | 31031..31597 | + | 567 | WP_110817441.1 | plasmid replication DNA-binding protein | - |
DLE54_RS11935 | 31726..32073 | + | 348 | WP_110817442.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
DLE54_RS11940 | 32075..32377 | + | 303 | WP_011954794.1 | XRE family transcriptional regulator | Antitoxin |
DLE54_RS11945 | 32392..33024 | - | 633 | WP_110817443.1 | recombinase family protein | - |
DLE54_RS11950 | 33400..33693 | - | 294 | WP_110817444.1 | DUF3817 domain-containing protein | - |
DLE54_RS11955 | 34144..34851 | - | 708 | WP_075107731.1 | lipoprotein signal peptidase | - |
DLE54_RS11960 | 35008..35649 | - | 642 | WP_110817445.1 | IS1595 family transposase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..36270 | 36270 | |
- | flank | IS/Tn | - | - | 35008..35649 | 641 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 116 a.a. Molecular weight: 13324.32 Da Isoelectric Point: 8.4810
>T106727 WP_110817442.1 NZ_CP029792:31726-32073 [Psychrobacter sp. YP14]
MWTVITTDLFNDWLYQQDQSTQEKVLAALVVLQQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPKRQAI
VLCIGDKGNNKRFYKEMLATADQQYECHLKTLGDL
MWTVITTDLFNDWLYQQDQSTQEKVLAALVVLQQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPKRQAI
VLCIGDKGNNKRFYKEMLATADQQYECHLKTLGDL
Download Length: 348 bp
>T106727 NZ_CP029792:31726-32073 [Psychrobacter sp. YP14]
ATGTGGACTGTCATCACAACCGATCTATTCAATGATTGGCTTTATCAGCAAGATCAATCGACACAAGAGAAGGTGCTTGC
CGCTTTAGTGGTTTTACAGCAGCAAGGCCCAAGCCTAGGGCGCCCTTTAGTGGACACTGTATATGACTCAAAATTTACCA
ACATGAAAGAGCTTCGGGTCCAGCATCGAGGTAAACCACTGAGAGCCTTTTTCGCATTTGATCCGAAAAGGCAAGCGATT
GTACTTTGTATCGGTGATAAGGGTAATAACAAGCGCTTTTATAAAGAAATGCTAGCCACAGCCGATCAGCAGTATGAGTG
TCACCTTAAAACCTTGGGGGATTTATAA
ATGTGGACTGTCATCACAACCGATCTATTCAATGATTGGCTTTATCAGCAAGATCAATCGACACAAGAGAAGGTGCTTGC
CGCTTTAGTGGTTTTACAGCAGCAAGGCCCAAGCCTAGGGCGCCCTTTAGTGGACACTGTATATGACTCAAAATTTACCA
ACATGAAAGAGCTTCGGGTCCAGCATCGAGGTAAACCACTGAGAGCCTTTTTCGCATTTGATCCGAAAAGGCAAGCGATT
GTACTTTGTATCGGTGATAAGGGTAATAACAAGCGCTTTTATAAAGAAATGCTAGCCACAGCCGATCAGCAGTATGAGTG
TCACCTTAAAACCTTGGGGGATTTATAA
Antitoxin
Download Length: 101 a.a. Molecular weight: 11385.16 Da Isoelectric Point: 7.0155
>AT106727 WP_011954794.1 NZ_CP029792:32075-32377 [Psychrobacter sp. YP14]
MTKTLQELLAERSLDSQARIQQLAEQLFLENQLYRIREELEISQKELAQTLGIKQPSLSAIENRGNDLKISTMKKYVEAM
GGKLRIDVELPTGKHIGFTV
MTKTLQELLAERSLDSQARIQQLAEQLFLENQLYRIREELEISQKELAQTLGIKQPSLSAIENRGNDLKISTMKKYVEAM
GGKLRIDVELPTGKHIGFTV
Download Length: 303 bp
>AT106727 NZ_CP029792:32075-32377 [Psychrobacter sp. YP14]
ATGACTAAGACATTACAAGAGCTATTAGCAGAGCGCTCTTTAGACAGCCAGGCGCGTATTCAGCAACTGGCCGAGCAGCT
ATTTTTGGAAAACCAACTCTACCGCATCCGAGAGGAGCTTGAAATCTCTCAAAAAGAACTTGCTCAAACTTTGGGTATTA
AGCAGCCTTCACTATCTGCTATAGAAAACCGTGGCAATGACCTTAAAATCTCAACCATGAAAAAATATGTTGAAGCCATG
GGTGGTAAGCTTCGTATTGATGTGGAGCTGCCAACGGGGAAGCATATTGGCTTTACTGTATAA
ATGACTAAGACATTACAAGAGCTATTAGCAGAGCGCTCTTTAGACAGCCAGGCGCGTATTCAGCAACTGGCCGAGCAGCT
ATTTTTGGAAAACCAACTCTACCGCATCCGAGAGGAGCTTGAAATCTCTCAAAAAGAACTTGCTCAAACTTTGGGTATTA
AGCAGCCTTCACTATCTGCTATAGAAAACCGTGGCAATGACCTTAAAATCTCAACCATGAAAAAATATGTTGAAGCCATG
GGTGGTAAGCTTCGTATTGATGTGGAGCTGCCAACGGGGAAGCATATTGGCTTTACTGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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