Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) higBA (relBE)/COG4683-HTH_37
Location 31726..32377 Replicon plasmid pYP14c
Accession NZ_CP029792
Organism Psychrobacter sp. YP14

Toxin (Protein)


Gene name higB Uniprot ID -
Locus tag DLE54_RS11935 Protein ID WP_110817442.1
Coordinates 31726..32073 (+) Length 116 a.a.

Antitoxin (Protein)


Gene name higA Uniprot ID -
Locus tag DLE54_RS11940 Protein ID WP_011954794.1
Coordinates 32075..32377 (+) Length 101 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
DLE54_RS11900 27007..27465 - 459 WP_025651570.1 DIP1984 family protein -
DLE54_RS11905 27514..27819 + 306 WP_162617755.1 hypothetical protein -
DLE54_RS11910 28138..28566 - 429 WP_110817438.1 hypothetical protein -
DLE54_RS11915 28837..29256 + 420 WP_110817439.1 PPC domain-containing protein -
DLE54_RS11920 29366..30049 - 684 WP_110817440.1 DUF421 domain-containing protein -
DLE54_RS11925 30327..30530 + 204 WP_044298583.1 CsbD family protein -
DLE54_RS11930 31031..31597 + 567 WP_110817441.1 plasmid replication DNA-binding protein -
DLE54_RS11935 31726..32073 + 348 WP_110817442.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
DLE54_RS11940 32075..32377 + 303 WP_011954794.1 XRE family transcriptional regulator Antitoxin
DLE54_RS11945 32392..33024 - 633 WP_110817443.1 recombinase family protein -
DLE54_RS11950 33400..33693 - 294 WP_110817444.1 DUF3817 domain-containing protein -
DLE54_RS11955 34144..34851 - 708 WP_075107731.1 lipoprotein signal peptidase -
DLE54_RS11960 35008..35649 - 642 WP_110817445.1 IS1595 family transposase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..36270 36270
- flank IS/Tn - - 35008..35649 641


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(12-106)

Antitoxin

(13-89)


Sequences


Toxin        


Download         Length: 116 a.a.        Molecular weight: 13324.32 Da        Isoelectric Point: 8.4810

>T106727 WP_110817442.1 NZ_CP029792:31726-32073 [Psychrobacter sp. YP14]
MWTVITTDLFNDWLYQQDQSTQEKVLAALVVLQQQGPSLGRPLVDTVYDSKFTNMKELRVQHRGKPLRAFFAFDPKRQAI
VLCIGDKGNNKRFYKEMLATADQQYECHLKTLGDL

Download         Length: 348 bp

>T106727 NZ_CP029792:31726-32073 [Psychrobacter sp. YP14]
ATGTGGACTGTCATCACAACCGATCTATTCAATGATTGGCTTTATCAGCAAGATCAATCGACACAAGAGAAGGTGCTTGC
CGCTTTAGTGGTTTTACAGCAGCAAGGCCCAAGCCTAGGGCGCCCTTTAGTGGACACTGTATATGACTCAAAATTTACCA
ACATGAAAGAGCTTCGGGTCCAGCATCGAGGTAAACCACTGAGAGCCTTTTTCGCATTTGATCCGAAAAGGCAAGCGATT
GTACTTTGTATCGGTGATAAGGGTAATAACAAGCGCTTTTATAAAGAAATGCTAGCCACAGCCGATCAGCAGTATGAGTG
TCACCTTAAAACCTTGGGGGATTTATAA

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11385.16 Da        Isoelectric Point: 7.0155

>AT106727 WP_011954794.1 NZ_CP029792:32075-32377 [Psychrobacter sp. YP14]
MTKTLQELLAERSLDSQARIQQLAEQLFLENQLYRIREELEISQKELAQTLGIKQPSLSAIENRGNDLKISTMKKYVEAM
GGKLRIDVELPTGKHIGFTV

Download         Length: 303 bp

>AT106727 NZ_CP029792:32075-32377 [Psychrobacter sp. YP14]
ATGACTAAGACATTACAAGAGCTATTAGCAGAGCGCTCTTTAGACAGCCAGGCGCGTATTCAGCAACTGGCCGAGCAGCT
ATTTTTGGAAAACCAACTCTACCGCATCCGAGAGGAGCTTGAAATCTCTCAAAAAGAACTTGCTCAAACTTTGGGTATTA
AGCAGCCTTCACTATCTGCTATAGAAAACCGTGGCAATGACCTTAAAATCTCAACCATGAAAAAATATGTTGAAGCCATG
GGTGGTAAGCTTCGTATTGATGTGGAGCTGCCAACGGGGAAGCATATTGGCTTTACTGTATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References