Detailed information of TA system TA106609

Bioinformatically predicted

Overview

TA module

• Type: I
• Classification (family/domain): symER/SymE(toxin)
• Location: 3148152..3148564
• Replicon: chromosome
• Accession: NZ_CP029741
• Organism: Escherichia coli strain AR_0085

Toxin (Protein)

• Gene name: symE
• Uniprot ID: U9YSY7
• Locus tag: AM464_RS16420
• Protein ID: WP_000132601.1
• Coordinates: 3148152..3148493 (-)
• Length: 114 a.a.

Antitoxin (RNA)

Gene name	symR
Locus tag	-
Coordinates	3148488..3148564 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
AM464_RS16410	3145565..3146611	-	1047	WP_000437621.1	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	-
AM464_RS16415	3146611..3147990	-	1380	WP_089518231.1	5-methylcytosine-specific restriction endonuclease subunit McrB	-
AM464_RS16420	3148152..3148493	-	342	WP_000132601.1	endoribonuclease SymE	Toxin
-	3148488..3148564	+	77	NuclAT_14	-	Antitoxin
-	3148488..3148564	+	77	NuclAT_14	-	Antitoxin
-	3148488..3148564	+	77	NuclAT_14	-	Antitoxin
-	3148488..3148564	+	77	NuclAT_14	-	Antitoxin
-	3148488..3148564	+	77	NuclAT_15	-	Antitoxin
-	3148488..3148564	+	77	NuclAT_15	-	Antitoxin
-	3148488..3148564	+	77	NuclAT_15	-	Antitoxin
-	3148488..3148564	+	77	NuclAT_15	-	Antitoxin
AM464_RS16425	3148721..3150115	-	1395	WP_001272447.1	type I restriction-modification system specificity subunit	-
AM464_RS16430	3150112..3151701	-	1590	WP_001063204.1	type I restriction-modification system methyltransferase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	-	-	3141524..3150115	8591

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin SymE-like (20-71)

Sequences

Toxin

Protein

• Length: 114 a.a.
• Molecular weight: 12203.02 Da
• Isoelectric Point: 8.5012

>T106609 WP_000132601.1 NZ_CP029741:c3148493-3148152 [Escherichia coli]
MTDTHSIAQPFEAEVSPANNRHVTVGYASRYPDYSRIPAITLKGQWLEAAGFATGTAVDVKVMEGCIVLTAQPPAAEESE
LMQSLRQVCKLSARKQKQVQAFIGVIAGKQKVA

Nucleotide

• Length: 342 bp

>T106609 NZ_CP029741:c3148493-3148152 [Escherichia coli]
ATGACTGACACGCATTCTATTGCACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCATGTCACCGTCGGTTA
TGCGAGTCGCTACCCGGATTACAGCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGCCGCCGGTTTTGCCA
CTGGCACGGCGGTAGATGTCAAAGTGATGGAAGGCTGTATTGTCCTCACCGCCCAACCACCCGCCGCCGAGGAGAGCGAA
CTGATGCAGTCGCTACGCCAGGTGTGCAAACTGTCGGCGCGTAAACAAAAGCAGGTGCAGGCGTTTATTGGAGTGATTGC
CGGTAAACAGAAAGTCGCGTAA

Antitoxin

Nucleotide

• Length: 77 bp

>AT106609 NZ_CP029741:3148488-3148564 [Escherichia coli]
AGTCATAACTGCTATTCTCCAGGAATAGTGATTGTGATTAGCGATGCGGGTGTGTTGGCGCACATCCGCACCGCGCT

Structures

Toxin

• AlphaFold DB: U9YSY7

Antitoxin